Structure of PDB 7qiy Chain P Binding Site BS01

Receptor Information

>7qiy Chain P (length=75) Species: 4081 (Solanum lycopersicum)

KEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRE
LMAKGLIRMVSAHASQQIYTRATNT

Ligand information

>7qiy Chain 2 (length=474)

uugacggaagggcaccaccaggaguggagccugcggcuuaauuugacuca
acacggggaaacuuaccagguccagacauaguagacugagagcucuuucu
augggugguggugcauggccguucuuaguugguauuugucugguuaauuc
cguuaacgaacgagaccucagccugcuaacuagcuaugcggagguucccu
ucgcggccagcuucuuagagggacuacggccuuuuaggccgcggaaguuu
gaggcaauaacaggucugugaugcccuuagauguucugggccgcacgcgc
gcuacacugauguauucaacgagcuuauagccuuggccgacaggcccggg
uaaucuuugaaauuucaucgugauggggauagaucauugcaauuguuggu
cuucaacgaggaauuccuaguaagcgcgagucaucagcucgcguugacua
cgucccugcccuuuguacacaccg

.<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<........<<.....
...>>..........<<<<<......<<<<<.<<........>>....>>
>>>...<<.<<<..<<.<<<<<<....<<<.<<.......<<<......>
>>...>>.>>>....<<<<<.<<..<<<<..<<<<.<<<<<<<<...>>>
>>>>>...>>>>..>>>>.>>.....<<<<<.....>>>>>........>
>>>>....>>>.>>>.....>>>>>>>.......>>>>>......>>>>.
>>>.....<<<<.<.......<<.......<<<.<<<<....>>>>.>>>
....>>.......>.>>>>...........<<<<<<..........>>>>
>>..........>>>>>>....<<<<<<<<.......>>>>>>>>.....
.>>...>>>>>>>>>>.>>.....

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7qiy Cryo-EM structure and rRNA modification sites of a plant ribosome.
• Resolution: 2.58 Å
• Binding residue (original residue number in PDB): K36 V37 S73 G74 S75 R78 H96 A97
• Binding residue (residue number reindexed from 1): K3 V4 S40 G41 S42 R45 H63 A64

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Cellular Component

• GO:0005840 ribosome
• GO:0022627 cytosolic small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7qiy, PDBe:7qiy, PDBj:7qiy
• PDBsum: 7qiy
• PubMed: 35643637
• UniProt: A0A3Q7F3F2