Structure of PDB 7emf Chain P Binding Site BS01

Receptor Information
>7emf Chain P (length=766) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTRM
IHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMA
DHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSR
VKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRG
RVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILP
SLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSL
RKETILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLG
LALAFHDGSVHIVHRLSLQTMAVFYSSVHLKAMQLSWTSLALVGIDSHGK
LSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQ
SLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKL
FLIAISSTLKSLLRPHFLNTPDKSPGDRLTEICTKITDVDIDKVMINLKT
EEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNLRPGHSFLRDGTSLGML
RELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGP
ASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRA
PPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQRWIK
NCLCGGLWWRVPLSYP
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7emf Chain P Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7emf Structures of the human Mediator and Mediator-bound preinitiation complex.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		C798 C801 C827 C829
Binding residue
(residue number reindexed from 1)		C723 C726 C752 C754
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003713 transcription coactivator activity
GO:0005515 protein binding
GO:0042809 nuclear vitamin D receptor binding
GO:0046966 nuclear thyroid hormone receptor binding
Biological Process
GO:0006357 regulation of transcription by RNA polymerase II
GO:0006366 transcription by RNA polymerase II
GO:0032968 positive regulation of transcription elongation by RNA polymerase II
GO:0045893 positive regulation of DNA-templated transcription
GO:0051123 RNA polymerase II preinitiation complex assembly
GO:0060261 positive regulation of transcription initiation by RNA polymerase II
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016020 membrane
GO:0016592 mediator complex
GO:0070847 core mediator complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7emf, PDBe:7emf, PDBj:7emf
PDBsum7emf
PubMed33958484
UniProtQ9Y2X0|MED16_HUMAN Mediator of RNA polymerase II transcription subunit 16 (Gene Name=MED16)

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