Structure of PDB 5z85 Chain P Binding Site BS01

Receptor Information

>5z85 Chain P (length=259) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNML
TMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFY
HSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLM
EGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATG
FHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFL
YVSIYWWGS

Ligand information

Ligand ID

DMU

InChI

InChI=1S/C22H42O11/c1-2-3-4-5-6-7-8-9-10-30-21-19(29)17(27)20(14(12-24)32-21)33-22-18(28)16(26)15(25)13(11-23)31-22/h13-29H,2-12H2,1H3/t13-,14-,15-,16+,17-,18-,19-,20-,21-,22-/m1/s1

InChIKey

WOQQAWHSKSSAGF-WXFJLFHKSA-N

SMILES

Software	SMILES
CACTVS 3.370	CCCCCCCCCCO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O
ACDLabs 12.01	O(CCCCCCCCCC)C2OC(C(OC1OC(CO)C(O)C(O)C1O)C(O)C2O)CO
OpenEye OEToolkits 1.7.6	CCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O
OpenEye OEToolkits 1.7.6	CCCCCCCCCCOC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)O)O)O)O
CACTVS 3.370	CCCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O

Formula

C22 H42 O11

Name

DECYL-BETA-D-MALTOPYRANOSIDE;
DECYLMALTOSIDE

PDB chain

5z85 Chain P Residue 308 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5z85 X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
Resolution	1.85 Å
Binding residue (original residue number in PDB)	M33 F37
Binding residue (residue number reindexed from 1)	M31 F35
Annotation score	1

Enzymatic activity

Enzyme Commision number

7.1.1.9: cytochrome-c oxidase.

Gene Ontology

	Molecular Function
GO:0004129	cytochrome-c oxidase activity
GO:0009055	electron transfer activity

	Biological Process
GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
GO:0008535	respiratory chain complex IV assembly
GO:0019646	aerobic electron transport chain
GO:0022904	respiratory electron transport chain
GO:1902600	proton transmembrane transport

	Cellular Component
GO:0005739	mitochondrion
GO:0005743	mitochondrial inner membrane
GO:0016020	membrane
GO:0045277	respiratory chain complex IV

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:5z85, PDBe:5z85, PDBj:5z85
PDBsum	5z85
PubMed	30077971
UniProt	P00415\|COX3_BOVIN Cytochrome c oxidase subunit 3 (Gene Name=MT-CO3)

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