Structure of PDB 4ce4 Chain P Binding Site BS01

Receptor Information
>4ce4 Chain P (length=169) Species: 9825 (Sus scrofa domesticus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PPPPPPPPPPPPPVSLANLKPNPGSRKPERRPRGRRRGRKCGRGHKGERQ
RGTRPRLGFEGGQTPFYLRIPKYGFNEGHSFRHQYQPLSLNRLQYLIDLG
RVDPTQPIDLTQLVNGRGVTIQPSKRDYGVQLVEEGADTFKAKVNIEVQM
ASELAIAAIEKNGGVVTTA
Ligand information
>4ce4 Chain A (length=1444) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
accaaagcuagcucaacauuuuuuuuaaauaaaauaaaacauucaccuaa
cauuaaaguauaggagauagaaauuuuuauccugacgcuauagagauagu
accguaagggaaagaugaaagaauaaaauaaaaguaaaaaaaagcaaaga
uuaccccuucuaccuuuugcauaaugguuuaaccagaaaaaaucuaacaa
agagaacuuuagcuagauaccccgaaaccagacgagcuacccaugagcag
uuuaaaagaaccaacucaucuauguggcaaaauagugagaagacuuguag
guagaggugaaaagccuaacgagccuggugauagcugguuguccgagaaa
gaauuuuaguucaaccuuaaaaauaccccaaaaauuccaauguauuuuua
agagauagucuaaaaagguacagcuuuuuagaaacggauacaaccuugac
uagagaguaaaucuuaauacacauaaucccaaaaaaacaaacuccuagcc
caauaccggacuaaucuauugaaacauagaagcaauaauguuaauaugag
uaacaagaagccuuucuccucgcacacgcuuacaucaguaacuaauaaua
uacugauaauuaacaaccaauaaaccaaaacaacacuaaaacguuuauua
auuacauuguuaacccaacacaggagugcaccaaggaaagauuaaaagaa
guaaaaggaacucggcaaacacaaaccccgccuguuuaccaaaaacauca
ccucuagcauuacuaguauuagaggcaaugccugcccagugacaccaguu
uaacggccgcgguauucugaccgugcaaagguagcauaaucacuuguucu
ccaaauaaggacuuguaugaauggccacacgaggguuuuacugucucuua
cuuccaaucagugaaauuaaccuucccgugaagaggcgggaauaaaaaaa
uaagacgagaagacccuauggagcuuuaauuaacuauuccaaaaguuaaa
cuuaacauggacuagcaauuucgguuggggugaccucggaguacaaaaaa
cccuccgagugauuuuaaucuagacaaaccagucaaaauaacccaucacu
uauugauccaaaauuuugaucaacggaacaaguuacccuagggauaacag
cgcaauccuguucuagaguuccuaucgacaauaggguuuacgaccucgau
guuggaucaggacacccaaauggugcagccgcuauuaaagguucguuugu
ucaacgauuaaaguccuacgugaucugaguucagaccggagcaauccagg
ucgguuucuaucuauuauaaauuucucccaguacgaaaggacaagagaaa
ugggaccaaccucacaaacgcgucucagagauaauuaaugauuuaaucuu
aaccuaauuaacucauaauaaauccagcccuagaacagggcaca
.........<<<<<.....................<......>.......
..........<<.....>>..............>>.>>>...........
.<<....>>.....................................<<<.
......>>>...<............>..<<<<<........<<<<<.<..
<<....>>...>.>>>>>..<<.<...<<<<.<.....<<<.<<<<<..<
<<<....>>>>...<<<..<<<<........>>>>.>>>....>>>>>.>
>>...<<<.....>>>......>.>>>>......>.>>..<<<<<.....
<<<<....>>>>..<<<<<<<<<<<<.....<<.>>.....>>>>>>>>>
>>.>....<<<<<<<<<......>>>>>>>>>...<<......>>....<
<<<.<<<..................................>>>>>>>..
......>>>>>...<<<<<......>>>>>.........>>>>>.<....
..<<..<<<<..>>>><<<..<<<<........<<<<<....<<....>>
..>>>>>......<<<..<<<<<<<.................>>>>>>>.
......>>>.....<<......>>.>>>>.....>>>..<<<<....<<<
<<<<.<<...............<<<<<<<<..<<<.........>>>...
<<<<<<.............>>>>>>....<<<.<<<..<<<<<....>>>
..>>>>><<<<<<......>>>>>>........<...........<<<<<
.......>>>>>.....>....>>>....>>.>>>>>>......>>.>>>
>>>>.>>>>.>>.....>.....<<<<<........>>>>>.......<<
<.<<<.<<......<<<<.<<<<<<..<<<<..<<<.<<<<.<<<<...>
>>>....>>>>.>>>.>>>>..<<<<.....>>>><<<<<<.........
..>>>>>>.<<<<....<<.<.<<<......>>>.>.>>.....>>>>..
........<<<....>>>............>>>>..>>>>>>.......<
<<....<<<<<<...<<.......>>...>>>>>>.....>>.>......
.<.<<<.<<<<<<..<<.<<<<<<......>>>>>>...>>.<<<<<...
..>>>>>.....>>>>>..>...>>>..>....<<<.<<<....>>>..>
>>....>>..>>>>>>.<<.<<<<<<<.................>>>>>>
><<<<<...............>>>>>.<<<.....<..............
......>....>>>.>>.........<<<<.......>>>>...
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4ce4 Architecture of the Large Subunit of the Mammalian Mitochondrial Ribosome.
Resolution4.9 Å
Binding residue
(original residue number in PDB)		L24 A25 P31 G32 S33 R34 K35 E37 R38 R39 R41 R43 R44 R45 R47 K48 C49 G50 R51 G52 H53 K54 E56 R57 Q58 R59 T61 R62 R64 F67 E68 G69 G70 Q71 T72 F74 Y75 L76 R77 K80 S88 P131 R134
Binding residue
(residue number reindexed from 1)		L16 A17 P23 G24 S25 R26 K27 E29 R30 R31 R33 R35 R36 R37 R39 K40 C41 G42 R43 G44 H45 K46 E48 R49 Q50 R51 T53 R54 R56 F59 E60 G61 G62 Q63 T64 F66 Y67 L68 R69 K72 S80 P123 R126
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 08:17:30 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4ce4', asym_id = 'P', bs = 'BS01', title = 'Architecture of the Large Subunit of the Mammalian Mitochondrial Ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4ce4', asym_id='P', bs='BS01', title='Architecture of the Large Subunit of the Mammalian Mitochondrial Ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0006412,0015934', uniprot = '', pdbid = '4ce4', asym_id = 'P'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0006412,0015934', uniprot='', pdbid='4ce4', asym_id='P')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>