Structure of PDB 3ud3 Chain P Binding Site BS01

Receptor Information
>3ud3 Chain P (length=87) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAF
VIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI
Ligand information
>3ud3 Chain R (length=92) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggucacgcacagggcaaaccauucgaaagagugggacgcaaagccuccgg
ccuaaaccauugcacuccgguagguagcgggguuaucgaugg
.....<.......<<...<<<<<<....>>>>>>...>>...<<<.<<<<
<<<..<<<..........>>>>>>>..>>>>>>....>....
Receptor-Ligand Complex Structure
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PDB3ud3 Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		Y13 N15 N16 E19 L49 K50 M51 R52 Q54 F56 K80 Q85 T89 S91 D92
Binding residue
(residue number reindexed from 1)		Y7 N9 N10 E13 L43 K44 M45 R46 Q48 F50 K74 Q79 T83 S85 D86
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding

View graph for
Molecular Function
External links
PDB RCSB:3ud3, PDBe:3ud3, PDBj:3ud3
PDBsum3ud3
PubMed22148472
UniProtP09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A (Gene Name=SNRPA)

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