Structure of PDB 7oyc Chain O2 Binding Site BS01

Receptor Information
>7oyc Chain O2 (length=133) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDE
SSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRA
LARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
Ligand information
>7oyc Chain 22 (length=1495) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca
ugcacguguaaguacgcacggagugaaacugcgaauggcucauuaaauca
guuaugguuccuuugaucacuuggauaacugugguaauucuagagcuaau
acauggcauuuaucaguggugacucuagauaaccgccgaucgcacgcacg
gcgacgauacauucggaugucugcccuaucaacuuucgaugguacuuucu
gcgccuaccauggugaccacggguaacggggaaucaggguucgauuccgg
agagggagccugagaaacggcuaccacauccaaggaaggcagcaggcgcg
caaauuacccacucccgacgcggggagguagugacgaaaaauaacaauuu
ggaaugaguacacuuuaaauccuuuaacgaggaucuauuggagggcaagu
cuggugccagcagccgcgguaauuccagcuccaauagcguauauuaaagu
ugcugcaguuaaaaagcucguaguuggaucuuguuuacuuugaaaaaauu
agaguguuccaagcaggccgccuggauacuucagcuaggaauaauggaau
aggacuccggggccaugauuaagagggacggccgggggcauucguauugu
gccgcuagaggugaaauucuuggaccggcgcaagacgaaccaaagcgaaa
gcauuugccaagaauguuuucauuaaucaagaacgaaagucggagguucg
aagacgaucagauaccgucguaguuccgaccauaaacgaugccgacuagc
gauccggcggcguuagacccgccgagcagcuuccgggaaaccaaagucuu
uggguuccggggggaguaugguugcaaagcugaaacuuaaaggaauugac
ggaagggcaccaccaggaguggagccugcggcuuaauuugacucaacacg
ggaaaccucacccggcccggacaauugacagauuucucgauucugugggu
gguggugcauggccguucuuaguugguggagcgauuugucugguuaauuc
cgauaacgaacgagacuccuccaugcuaacuaguuacgcgaccggucggc
guaacuucuuagagggacaaguggcguucagccacacgagaucgagcaau
aacaggucugugaugcccuuagauguccggggcugcacgcgcgcuacacu
gaacggaucagcguguccugcgccgacaggugcggguaacccgcugaacc
ccguucgugauagggaucggggauugcaauuauuucccaugaacgaggaa
uucccaguaagugcgggucauaagcucgcguugauuaagucccugcccuu
uguacacaccgcccgucgcuacuaccgauuggaugguuuagugagguccu
cggaucggcgccgagaagacgaucaaacuugacuaucuagaggaaguaaa
agucguaacaagguuuccguaggugaaccugcggaaggaucauua
...<<<<<.[.((((>>>>><<<.<<<<<<...<.<<.........<<<.
<<<..<<....<.....<<...>>....>.>>......<<........<<
<.<<<..<<....<<<<<...<<.....<<.<<<.....>>>.>>.....
.>>..<<..<<<<<...<......>..>>>>>..>>...<<<<.<<..>>
>>>>.>>>.>>...>>>>>.>>>.<<<....<<<....<<<<<<......
.....>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.
>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>>>...
......<<<....<<<<...>>>>..>>>......>>.>.....<<<.>>
>......<<..<...........>..>>.........<<<<<((......
<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>.>>>....
.....<.<((.....<.<<...<<<.<<......<<<<<<.<.......<
<...<.......>.<<<<.>>>>...>>......>.>>>..>>>......
..<.<<<..>>>.>....>>....<<<<<<..<...<<<<..<<..<<<<
<<<<...<<<......>>>......>>>>>>>.>.>>.......<<....
>>...>>>>..>..>>>.>>>...>>>...>>.>....<<<<<<<...<.
..<<<<.<.....>.>>>>...>>>>>>>>..........<<<.<<.<<<
..<.<<<<<<.<<<.>>>>>>>>>.>..>>>...<<..))>>...>>...
..>>>.>.>.<<<......<<<......>>>....>>>..)))).]<<<<
<.<<<<<<<..<<..<<<<<..<<<.<<<<<<......<<........>>
..........<<<<<......<....<<......>>..........>...
<<.<<<..<<<<<<<<.....<<<.<<<<<....>>>...<<<......>
>>...>>.>>>....<<<..<<...<<<<..<<<<<<<<<<<..>>>.>>
>>>>>>..>>>>..>>....<<<<<.....>>>>>........>>>....
.>>.>>>...>.>>>>>>>.......>>>>>...>>.>>>>.>>>.....
<<<<<<........<.<<<<<<<<....>>>>>>>>....>.........
>>>>>>......<.....<<<<<..........>>>>>.....>.....>
>>>>.....<<<<<<<<.......>>>>>>>>......>>...>>>>>>>
>>>.>>....<..<<.<..<<<<.<<....<<<<<<<<.<<<..<<<<.<
<...<<<<<>>>>>...>>.>>>>..>>>.>>>>>>>>...>>.>>>>..
.>.>>...>.....<<<<<<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7oyc A molecular network of conserved factors keeps ribosomes dormant in the egg.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		H32 F34 N38 D39 F41 H43 G49 K50 E51 T52 R55 T57 G59 D65 R66 R98 G102 P134 I135 P136 S137 D138 T140 R141 K143 G144 G145 R146 R147 R149 R150 L151
Binding residue
(residue number reindexed from 1)		H14 F16 N20 D21 F23 H25 G31 K32 E33 T34 R37 T39 G41 D47 R48 R80 G84 P116 I117 P118 S119 D120 T122 R123 K125 G126 G127 R128 R129 R131 R132 L133
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 12:07:34 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7oyc', asym_id = 'O2', bs = 'BS01', title = 'A molecular network of conserved factors keeps ribosomes dormant in the egg.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7oyc', asym_id='O2', bs='BS01', title='A molecular network of conserved factors keeps ribosomes dormant in the egg.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7oyc', asym_id = 'O2'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7oyc', asym_id='O2')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>