Structure of PDB 7ph9 Chain O Binding Site BS01

Receptor Information
>7ph9 Chain O (length=80) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RMGRVHYPTYRIVAVDSRVKRDGKYIALIGHLNPALKENKCKIDEAVALE
WLNKGAKPTDTVRSLFSQTGLWKKFVESKK
Ligand information
>7ph9 Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.((([>.>>>.<<<..<<<<<..<<<<<<<<..<..<<
...<...<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<.<<<..<<.......<<<<<.<<.....<<<<<......>>>>>
......>>.>.....<<<<<<<........>>>>>>>....<<<<<<...
.>>>>>>>>>>......>>>>>.>>>.<<.....<<<...<<<<<<<...
....>>>>>>>.>>>.......>>..<<<<<<<<....>>>...>>>>>.
>>.<<<<<............>>>>>.<<<<....>>>>....>..>>>..
......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...
.....<<.....>>.......>>>>...<<..<<<.........<<<<<<
<........>>>>>>>..........>>>...>>.....<<<<<(((...
<<<<<.....<..))).>.......>>>>>>>>>>..>>>>>.>>>....
......<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<.....
<<<<<<<.....>>>>>>>..>>>>>>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<<.<<..<<<......>>>.....>>.>>>>
>.>..........<<....>>.>>>>>>>..>>>>..>>>...>>>...>
>>>....<<<<<<<...<...<<<<.........>>>>...>>>>>>>>.
.........<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<<.......<<<....>>>.....>>>..
].))).]<<<<<.<<<<<<<..<...<.<...<<<<<<<.........<<
........>>..........<<<<<<<......<<<<.........<<<<
....>>>>......>>.>>.<<<.<<....<<<<<.......<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<..
.........>>>>>>.....<<<<<....>>>>>........>>>>....
.....>>>...>>..>>>>>...>>>>>>>.......>>>>>>>.....<
<<<<<......<<<..<<..<<<<....>>>>..>>....>>>.....>>
>>>>...........<<<<<<<........>>>>>>>...........>.
>.......<<<<<<..........>>>>>>.......>....>>>>>>>>
>>.>>.......<<.<.<<<<.<<<..<<<<<<..<<<<.....<<<<<.
<<<<..<<....>>.>>>>>>>>>....>>>>..>>>>>>..>>>.>>>>
..>.>>.........<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7ph9 Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution8.7 Å
Binding residue
(original residue number in PDB)
M3 G4 R5 V6 H7 Y8 T10 Y11 R12 R19 V20 K21 R22 D23 G24 K25 Y26 H32 A36 L37 K38 K55 G56 D61 T62 S65 W73 K74
Binding residue
(residue number reindexed from 1)
M2 G3 R4 V5 H6 Y7 T9 Y10 R11 R18 V19 K20 R21 D22 G23 K24 Y25 H31 A35 L36 K37 K54 G55 D60 T61 S64 W72 K73
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

View graph for
Cellular Component
External links
PDB RCSB:7ph9, PDBe:7ph9, PDBj:7ph9
PDBsum7ph9
PubMed36171285
UniProtP75131|RS16_MYCPN Small ribosomal subunit protein bS16 (Gene Name=rpsP)

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