Structure of PDB 6swe Chain O Binding Site BS01

Receptor Information
>6swe Chain O (length=143) Species: 272844 (Pyrococcus abyssi GE5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAG
YLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAI
REDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSR
Ligand information
>6swe Chain 2 (length=468) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guaaggcgggggagcacuacaagggguggagcgugcgguuuaauuggauu
caacgccgggaaccucaccgggggcgacggcaggaugaaggccaggcuga
aggucuugccggacgcgccgagaggaggugcauggccgccgucagcucgg
cguccacuuaagugugguaacgagcgagacccgcgcccccaguugccagu
cccucccgcucgggagggaggcacucuggggggacugccggcgauaagcc
ggaggaaggggcgggcgacgguaggucaguaugccccgaaacccccgggc
uacacgcgcgcuacaaugggcgggacaaugggugccgaccccgaaagggg
gagguaauccccuaaacccgcccucaguucggaucgcgggcugcaacucg
cccgcgugaagcuggaaucccuaguacccgcgcgucaucaucgcgcggcg
aauacgucccugcuccuu
.........<<<<<<<..<<.<<<<<<..<<<<<<<<<<......<<...
.....>>..........<<<<<<<...<<<<........<<<.<<<....
...>>>.>>>......>>>>...<<.<<<..<<<<<<<<.....<<<<..
...<<<<......>>>>....>>>>....<<<<<.<<<<<<<..<<...<
<<<<<<<....>>>>>>>>.>>...>>>>>>>.....<<<<<.....>>>
>>........>>>>>.....>>.>>>...>>>>>>>>....>>>>>>>..
.>>.>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>
..>>....>>>.....>>>>>>>......<....<<<<<<<........>
>>>>>>....>.....>>>>>>.....<<<<<<<.......>>>>>>>..
.....>>...>>>>>>>.
Receptor-Ligand Complex Structure
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PDB6swe Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		Q20 W23 G30 V31 G32 N34 F35 W77 N80 P82 Y115 R119 H120 V126 R127 Q129 R130 T131 R132 S133 N134 F135 R136 G138 T140
Binding residue
(residue number reindexed from 1)		Q18 W21 G28 V29 G30 N32 F33 W75 N78 P80 Y113 R117 H118 V124 R125 Q127 R128 T129 R130 S131 N132 F133 R134 G136 T138
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6swe, PDBe:6swe, PDBj:6swe
PDBsum6swe
PubMed32029867
UniProtQ9V1A0|RS13_PYRAB Small ribosomal subunit protein uS13 (Gene Name=rps13)

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