Structure of PDB 3jd5 Chain O Binding Site BS01

Receptor Information
>3jd5 Chain O (length=173) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EDDPPPSMLLKDYQNVPGIEKVDDVVKRLISLEMANKKEMLKIKKEQLMS
KVVENPKDTSSLEAQIVALTVKIRSYEEHMQKHQKDKAHKRYLLMSIDKR
QKMLKNLRKTNYPVFEKTCKELGIEYTFPPPYHRKIHRRLATKKALCIRV
FQEVQKLKKQKRALKTAAAAAQK
Ligand information
>3jd5 Chain A (length=952) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agguuuggucccagccuuccuguuaacucuuaauaaacuuacacaugcaa
gcaucuacaccccagugagaaugcccucuagguuauuaaaacuaagagga
gcuggcaucaagcacacacccuguagcucacgacgccuugcuuaaccaca
ccccacgggaaacagcagugacaaaaauuaagccauaaacgaaaguuuga
cuaaguuauauuaauuaggguugguaaaucucgugccagccaccgcgguc
auacgauuaacccaagcuaacaggaguacggcguaaaacguguuaaagca
ccauaccaaauaggguuaaauucuaacuaagcuguaaaaagccaugauua
aaauaaaaauaaaugacgaaagugacccuacaauagccgacgcacuauag
cuaagacccaaacugggauuagauaccccacuaugcuuagcccuaaacac
agauaauuacauaaacaaaauuauucgccagaguacuacuagcaacagcu
uaaaacucaaaggacuuggcggugcuuuauauccuucuagaggagccugu
ucuauaaucgauaaaccccgauaaaccucaccaauucuugcuaauacagu
cuauauaccgccaucuucagcaaacccuaaaaaggaaaaaaaguaagcgu
aauuaugauacauaaaaacguuaggucaagguguaaccuaugaaauggga
agaaaugggcuacauucucuacaccaagagaaucaagcacgaaaguuauu
augaaaccaauaaccaaaggaggauuuagcaguaaacuaagaauagagug
cuuaguugaauuaggccaugaagcacgcacacaccgcccgucacccuccu
caaauagauucagugcaucuaacccuauuuaaacgcacuagcuacaugag
aggagacaagucguaacaagguaagcauacuggaaagugugcuuggauaa
au
<<<.<..{..[[.>.>>><<<<<<<.<..<<<<<<<.....<<<.<<<..
..............<<......<<<<<<..<<<.......>>>..>>>>.
>>.<<<....<<<..<<.....>>.>>>......>>>..........>>.
..............>>>>>>..........<<.....<<......>>...
>>....>.>>>>>>....<<<<<<<.....(((.....((.>>>))....
...)))..>>>.>..>.>>>>>>>.....<<<((.....<<<.<...<..
..........<<<<<<........<<.<..<<<......>>>...>.>>.
................<....>..>>>>>>......>....>>>>..<<<
<<<<<....<...<<<<.........>>>>...>.>>>>>>..>>.....
.<<<<<<.......))...>>>>>>.>>>.<<<.......<<<....>>>
.....>>>...]]..}<<<<<.<<<<<<<....<..<<<<<...<<<<<<
<<<.....<<........>>..........<<<.<<<...........<<
.<<<..<<<<<<.......<<..<<<<<....>>>.......>>..>>..
...<<.......>.>........>>>...>>>>>>>>....>>>.>>>..
>>.>>>>>>>......<<<<......>>>>..............<<<<<<
........>>>>>>..........>>>>>.....<<<<<<<.........
>>>>>>>......>....>>>>>>>>>>.>>....<..<<.<...<<<<<
<....<.....<<<<<....<........>....>>>>>...>......>
>>>>>....>.>>...>......<<<<<<<<....>>>>>>>>.......
..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3jd5 Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome.
Resolution7.0 Å
Binding residue
(original residue number in PDB)		N98 K99 K100 S122 Q127 L131 K134 H141 H145 K147 D148 K149 A150 H151 R153 Y154 L156 M157 K161 K164 Y194 H195 R196 K197 H199 R200 R201 L202 K205 K206 C209 F213 K223 K227
Binding residue
(residue number reindexed from 1)		N36 K37 K38 S60 Q65 L69 K72 H79 H83 K85 D86 K87 A88 H89 R91 Y92 L94 M95 K99 K102 Y132 H133 R134 K135 H137 R138 R139 L140 K143 K144 C147 F151 K161 K165
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
GO:0032543 mitochondrial translation
Cellular Component
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005759 mitochondrial matrix
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3jd5, PDBe:3jd5, PDBj:3jd5
PDBsum3jd5
PubMed24799711
UniProtP82913|RT15_BOVIN Small ribosomal subunit protein uS15m (Gene Name=MRPS15)

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