Structure of PDB 3j8g Chain O Binding Site BS01

Receptor Information

>3j8g Chain O (length=116) Species: 83333 (Escherichia coli K-12)

DKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAA
STVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHG
RVQALADAAREAGLQF

Ligand information

>3j8g Chain A (length=115)

gcugcggccguagcgcgguggucccaccugaccccaugccgaacucagaa
gugaaacgccguagcgccgaugguaguguggggucuccccaugcgagagu
agggaacugccaggc

.<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>..
>>>...>>>>>>.>>.<<.....<.<<<<<<<<...>>>>>>>>...>..
.>>...>>>>.>>..

Receptor-Ligand Complex Structure

Structure summary

• PDB: 3j8g Structural insights into the function of a unique tandem GTPase EngA in bacterial ribosome assembly
• Resolution: 5.0 Å
• Binding residue (original residue number in PDB): K3 R15 H29 P32 R33 H34 Y36 Q38 I40 G44 S45 E46 V47 E55 K63 Y64 N67 K68 R102
• Binding residue (residue number reindexed from 1): K2 R14 H28 P31 R32 H33 Y35 Q37 I39 G43 S44 E45 V46 E54 K62 Y63 N66 K67 R101

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0008097 5S rRNA binding
• GO:0019843 rRNA binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:3j8g, PDBe:3j8g, PDBj:3j8g
• PDBsum: 3j8g
• PubMed: 25389271
• UniProt: P0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)