Structure of PDB 3hhz Chain O Binding Site BS01

Receptor Information
>3hhz Chain O (length=421) Species: 11277 (Vesicular stomatitis Indiana virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDL
RGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDT
IGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPE
YRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMF
FHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILN
REVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWG
QLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVG
DNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAV
MSLQGLREKTIGKYAKSEFDK
Ligand information
>3hhz Chain R (length=45) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
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Receptor-Ligand Complex Structure
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PDB3hhz Structure of the vesicular stomatitis virus nucleocapsid in complex with the nucleocapsid-binding domain of the small polymerase cofactor, P.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		R143 M149 E151 K154 K155 R214 Y215 D224 A226 K286 S287 S290 S291 V292 R312 R317 R408
Binding residue
(residue number reindexed from 1)		R142 M148 E150 K153 K154 R213 Y214 D223 A225 K285 S286 S289 S290 V291 R311 R316 R407
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:3hhz, PDBe:3hhz, PDBj:3hhz
PDBsum3hhz
PubMed19571006
UniProtQ77E03|NCAP_VSIVN Nucleoprotein (Gene Name=N)

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