Structure of PDB 7jil Chain N Binding Site BS01

Receptor Information
>7jil Chain N (length=125) Species: 986 (Flavobacterium johnsoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRHGKKINHLSRQTGHRKAMLANMACSLIEHKRINTTVAKAKALKQFVEP
LITKSKEDTTHNRRIVFAYLRSKYAVTDLFRDVAAKVGDRPGGYTRIIKV
GNRLGDNADMAMIELVDFNELYNGG
Ligand information
>7jil Chain 1 (length=2742) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaauaagggcguauggggaaugccuaggcucucagaggcgaugaaggacg
ugauaagcugcgaaaagcugcggggacuggcacacacagauugauccgca
gauauccgaauggggcaacccgcuauauugaagauauagcacaccgauag
gugggcaaacccgcugaacugaaacaucuaaguaggcggaggagaagaaa
acaaaagugauuccguaaguaguggcgagcgaacgcggauuagcccaaac
cagugcuacggcagugcugggguuguaacaugcagaaccggaaguuacug
gaaagugacgccaaagagggugauagccccguauggguaauaaauguggu
auccugaguagggcgggacacgugaaacccugucugaauucggcgggacc
auccgcuaaggcuaaauacuccugagagaccgauagugaaccaguaccgu
gagggaaaggugaaaagaaccgugaauaacggagugaaauagauccugaa
accauacgcuuacaagcggucggagcccuuucguggggugacggcgugcc
uuuugcauaaugagccuacgaguuaacgcugcuggcaaggauaaguacuu
caguacggauccgcagcgaaagcgagucugaauagggcgcuuuagucagu
aguguuagacgcgaaaccgugugaucuacccaugggcagguugaagcugu
gguaacacacaguggaggaccgaaccgguugacguugaaaagucuucgga
ugaccuguggguaggggugaaaggccaaucaaacucggaaauagcucgua
cuccccgaaaugcauuuaggugcagcguuaguuauaaaguuauacagagg
uagagcuacugauuggaugcgggggcuucaccgcccaccaauuccugaca
aacuccgaaugcuguauaauguucacuaacagugagggcuugggugcuaa
gguccaaguccgagagggaaagaacccagaccaucagcuaagguccccaa
auauaugcuaaguugaaagaacgagguuugucugcccagacagcuaggau
guuggcuuggaagcagcccauuuaaagagcguaacagcucacuagucgag
cggacgagcauggauaauaaucgggcauaagcauauuaccgaagcuaugg
auuugcaaguuugcaagugguaggggagcauucuaacaggguugaagguu
uuucguaaggagggcuggacugguuagaaaagaaaauguaggcauaagua
acgauaaugcgggcgagaaacccgcacaccgaaaaacuaagguuuccaca
gcuaugcuaaucagcuguggguuagucugguccuaaggcgaacccgaaag
ggacagucgauggcuaacggguuaauauucccguacuacuaauuacugug
auggggugacggagugaugaaagcgccgcgaacugacggaauaguucguu
gaaguaccuagcuauagguccuguaguaaaaugcgcaggaacuggugaaa
uacgauaguacucggagucgacaaagagauagugcgccuaagggcuucca
agaaaaaccucuaaacuucagguaauuaguaccaguaccguaaaccgaca
cagguaguugaggagagaauccuaaggugcucgagauauucauggcuaag
gaauuaggcaaaauagaccuguaacuucgggagaaaggucgcccugagca
aucagggccgcagugaagagguccaggcgacuguuuaucaaaaacacagg
gcucugcaaaaucguaagaugaaguauagggccugacaccugcccggugc
uggaagguuaagaggagauguuaucuucggagaagcauugaauugaagcc
ccaguaaacggcggccguaacuauaacgguccuaagguagcgaaauuccu
ugucggguaaguuccgaccugcacgaaugguguaacgaucuggacacugu
cucagccaugagcucggugaaauuguaguaacggugaagaugccguuuac
ccgcagugggacgaaaagacccugugcaccuuuacuauagcuuaguacug
accuuggauaaauguuuaucugaggccuaaccucgcugcgggggacagug
cuugguggguaguuugacugggguggucgccuccaaaagaguaacggagg
cuucuaaagguucccucaguacgcuugguaaccgugcguagagugcaaug
gcauaagggagcuugacugagagacauacaggucgaucagguacgaaagu
agagcauagugauccggugguuccgcauggaagggccaucgcucaaagga
uaaaagguacgccggggauaacaggcugaucucccccaagaguucauauc
gacggggggguuuggcaccucgaugucggcucgucacauccuggggcugg
agaaggucccaaggguugggcuguucgcccauuaaagugguacgcgagcu
ggguucagaacgucgugagacaguucggucucuaucuacugcgggcguua
gaaauuugaguggaucugauucuaguacgagaggaccgaauuggacuaac
cucuaguguaucuguugucccgccaggggcaccgcagaguagcuacguug
ggaagggauaagcgcugaaagcauauaagcgcgaaacccaccacaagaug
agauuucuuuuaaggaucguggaagaugaccacguugauaggcuauagau
guaaaggcaguaaugucauagucgaguaguacuaauaauccg
......<<<<<<<<<<.....<<<..<<<<<<<<<<<<<......<<<<<
<.....((.>>>.....<<<<<<<..<<<)).....>>>.....>>>>>>
>...>>>....<<<....>>><<<<<<<.....>>>>>>>.<<<<....>
>>>.>>...<<<<<<.....<<....>>......>>>>>.>.........
<<....>>...<<<<<.....<<.....>>....>>>>>...<<<....<
<<<<<<<.....>>>>>>>>.......<.<<......<<<...<<<<<..
....>>>>>((......<<<.....))>>>...>>>.......>>.....
.>........<<<<<<<...........>>>>>>>......<<<<<..<<
<<>>>>>..>>>......>>.>>>>>>>.>>...............<<..
..>>....>>.........<<<<.....>>>>.............>....
.>>>>>>>>>>.......<<<<..<<<<<.....>>>>>..>>>>...<.
<........>.>.<<<<<<....<<<<<<<<<<<<<..<<<...<<<.<.
..>>>>...>>>...<<....>>..<<<<.....>>>>......>>>>>>
>>>>>>>..<<.<...<<<.<<.....<<<<<<<<<..<<<....<<<<<
<......>>>>>>.....>>>...<<<...<<<........>>>..>>>.
...>>>>>>>>>...<<<.....>>>......>>.>>>......>.>>..
<<<<<<....<<<<<....>>>>><<<<<<<<......<<<<<<<<<...
..<<<....<<.<.<<<....<<<<.........>>.>>...>>>.>.>>
..>>.>.....>>>>>>>>>....>>>>>>.>>..<<<<<<<<<<.....
.>>>>>>>>>>....<<<......>>>...<<<<.<<<...<<<(((...
..<<<<<<.....<<......<<..<<<<<<<<<<.......<<<<<.<<
<..<<<<.......>>>>>>>.......<<......>>...>>>>>...>
>>>>>>>>>.>>..........)))>>...>>>>>>.>>>...>>>>>>>
<<<<<<<<..>>>>>>>>....>>>>>>..<<<<<<<.<.......<<<<
<<<<....>>>>>>>>....>.>>>>>>>........>>>>>><......
<<.....<<<<<<.......>>>>>><<<<....<<<<<.<<...<<<<<
<...<<.....>>.>>>>>>....((<<<<.<<...<<<...<<<....>
>>...>>>...>>...<<<<<........>>>>>))<<<<<<<<<<<<<.
..<<<<<...<<<<<.......<<<<.<<<<<<....[[....>>>>>>.
...<<<....<<<..<<.<<<<<<.<<.....>>>>>>>>.>>>>>....
>>>.......<<<...<<..>>...>>>.....>>>>......>>>>>..
......>>>>>...>>....>>>>>>>>>>>>>>>..>>.....<<....
..>>>>>>>.<<<<.....>>>>..>>>>..<<<<....<<<<<<<<.<<
.........<.....<<<<<....<<..>>.....>>>>><<<<<<<...
.>>>>>>>............<<<<<<<<<..<<<.........>>>..<<
<<<<<.....<<<....>>>.......>>>>>>>.<<<<<.<<<..<<<<
<<<..<<<<..<<...<<<<<<.<<....>>..>>>>>>...>>..>>>>
>>>>>..>>>>><<<<<<.......>>>>>>........<..........
.<<<<<<.....>>>>>>.....>....>>>>>..>>.>>>>>>>..>..
>>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<
<<<<<<<.<<<.<<......<<<<.<<<<<<..<<<<<.<<<.<<<<<.<
.<<<<<<<<<<<..>>>>>>>>>>>.>...<<<<<<.>>>>>>....>>>
>>.>>>..>>>>>..<<<<.....>>>><<<<<<...........>>>>>
>..<<...<<<<<<<...<<<<<.........>>>>>.....<<...(((
>>....>>>>>>>...<<<<..<<<......>>>..>>>>.<<<....>>
>.>>))).......<<<<<<<.<<..>>>>..>>>>>>>>>.........
....>>>>..>>>>>>.......<<<<.<.<<<<<<...<<.......>>
...>>>>>>...>>>>.>.......<<<<<.<.<<<<..<<<<<<<<<..
....>>>>>>..>>>.<<<<<.....>>>>>.....>>>>...>...>>>
.>>....<<<<<<<....>>>.>>>>....>>..>>>>>>>>>>>....<
<<<<<<...<<<<..<<<<<<<...............>>>>>>>.<<<<<
...<<<<...<<<<<<<<<<<.]].>>>>>>..>>>>>...>>>>.>>>>
>...<<<....<<<<<...........>>>>>....>>>.>>>>......
.>>>>>>>.....<<<<<<<<<.......>>>>>....<<<<<<<<.<<<
.....<<<<....>>>>...>>>..>>>>>.>>>...>>>>.
Receptor-Ligand Complex Structure
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PDB7jil Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		M1 R2 H3 G4 K5 K6 N8 H9 H16 R17 N23 I34 N35 T36 K42 E49 T53 K54 T60 H61 R63 R64 F67 R71 K73 R90 P91 G92 G93 R96 K99 R103 G105 D106 N107
Binding residue
(residue number reindexed from 1)		M1 R2 H3 G4 K5 K6 N8 H9 H16 R17 N23 I34 N35 T36 K42 E49 T53 K54 T60 H61 R63 R64 F67 R71 K73 R90 P91 G92 G93 R96 K99 R103 G105 D106 N107
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7jil, PDBe:7jil, PDBj:7jil
PDBsum7jil
PubMed33330920
UniProtA0A1M5L6R0

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