Structure of PDB 6ywy Chain N Binding Site BS01

Receptor Information
>6ywy Chain N (length=133) Species: 5141 (Neurospora crassa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QPPISQQVKELLPVLAAQPGHYTTIHIHGKPYLVTEGDTVKLPFKMPGVA
PGDVLRLNRASVIGSRDLTLQGAPYVDERLFECRAIVMGTESEPMRVMIK
KKRRCRKKKHVFSKHKYTVLRINQLKINDVSSL
Ligand information
>6ywy Chain A (length=2843) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guaauggauauaaagcuuauguuuauauauauauauaaguauauaaagag
acuacuaccaauagcuacacuauguauuaaggagaguauaacuuaauuua
uguuuaugauagagguuaucaacauaugaacucuuagagaaauuacuuaa
uaaacgaagugaauugaaauaucuuauuaacuucaggaaaagaaaucaaa
cgagauucuaugauuagugugaacgaaaauagagcagccuauuaaaauaa
guaaaauggcuuuaaagcuguuugaauauuguggggaaccuuccucaaag
gcuaaauauaauacaugaguuacagagaaaaguaccgugagggaaagcuu
ugaaauaguaguuuuauaagcagcucaagcaauaagaaagcgagagcgua
ccuuuugcauaaugggucaccaaguuaauuuuagaugcgagcgaauuaga
ugugcauaguuaaaccgaucauuaaaauaaugaauagugucuaaaguuag
acccgaagccuggugaucuuacuauagucaggacuauaaagguccgaacg
gguuaucguugcaaagauauccgaagaacuaugguaagcgagugaaagac
aacacugacuaggauagcugguuuucugcgaaaccuauaauaguaggcaa
uuuaaguaacaucuuaguagguacagaacuuaaucucagacaagauguag
auuuucauaccuagguaugaaaugcauuuuuuuuuguauacaucggggga
ucgugaagauuuuaucggugaguauguagacucggaaugacaaagaugaa
ucuugaauaaucagacauagaaugauaagguuguaugucaaaagggaaac
agcccagaacaagaguuaagguuccaaaauuauuauuaagugaaauaaag
aaaguuuuuauauaagucgacaagaagaugggcuuggaagcagccauaau
uuaaagaucucguaacagagcacuuguuaaaucuuaaaagcaucgaaaau
uuaacggaucuaaauaauauaccgaaaccuuguccauauguaacauuagu
aauaauauuaauguuauuugaugggguagcagaacguugagugaaucuua
gauuuuuuuuuuauaacuaaauauagaugauaacucaagugagaauggug
acaugaguaacaaaaaagaguuuaagguaccuaaaagguaucuuagaguc
ucgccuaaagcuuauggcuacgucaaguaacggccucuaaguuuauaauc
ugaagauuaugacgaugagaaaacuuugguaccaacauuuaaaagugaaa
auugugcaggaaggauaaaccguaccuagaaucugaaacaaguaagcuag
uagagaauacgaaggcgugaaugagauaacaaucauaaaggaacucggca
aacuaacuaccguaacuuagggauaaggagagcucauuagucucgaacga
guaaaaaggaagaagcauggaauauuguuguacgacuguuuaauuaaaac
aaagcacuuugcaaaaagacgauaagucuaaguauugagugugauuucug
cccgaugccggcugguuaacgaauuuucuaaauugaaaaaaaauuugguu
ucagaggaacccccgguuaauggcggccuuagcgugaggguccuaaggua
gcgaaaugccuuggccguuaaaugcggucuugcaugaaugauguaacgau
acaacagcugucucuaugauugacucagugaaauuggaauaacugugcag
auacaguuuaccucuaguuagacgagaagacccuaugcagcuuuacuguu
acuaauuauugaauacgauucugaaaauuuccaguguaaaagguaaucga
uaagauauaauugaaacaccuuuauuuuucuaucguauuauuaaaccuua
aauuaaggaacaauuguuagaagacaguuuaugcggggcacaggccccau
aaagaguaaaugggugugucuaaaauguuugcaauuuuuuauaguauaua
ucaaaucaucuuuaugcuauucauagaccuuggguacaguauaaaaauua
uauauguauuaauuuacauauauuuuuucuaagaaauuagguaagauuuu
guuuauagagaaauuagauguaaaaaaaaaaucuuaugagggcggauccg
cuucuaauauuuuuuuguaguuauuauuauaauaauaaucauguuuauua
cuuaaaaagcuuaauggcuuaaucuugccuuacuguuugauuaacaacaa
aucuuacagucgcguaagcggggcauaggaucacaagauacaaaaaggaa
agaucuuggauuuuuggaaaagcuacgcuagggauaacaggcuaauuugc
gcaagaguguacaaaaugagugcgcgguuuggcaccucgaugucggcuug
acuaauccucauggaugcagaaacuauguaggguacgacuguucgucgau
uaaaaaguuacaugagcuggguuaaauacgucgugagacaguaugguuuc
uaucuucuagagggaauuagaauauaauaaggauuaaccuuuguacgaaa
ggaacaugggguacuauuguuaacaguuuuauuaaccucugguuuaccug
uuguuuaugugccuuagggauguuaccgucacuugaguaaauacaauagc
auaagcauggcaggaaagcuaaguuagucaaaaauaagugcugaaagcau
auaggcacgaaauuuaccuuaagauauuucuuaaauauacguaagaaaau
auuacguuaauaggcuuaguuuguaauaaucuagagauuuuaaggaacua
aguacuaauuuuauaaaaaacugaaugauuaauauaucuuaca
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...>>>...........>>>>>>..>>>>>.>>>>>>>>......<<<<.
....>>>>....>>.>>>>>...>>>>>...<<.......>>.<<<<<<.
..........>>>>.>>..<<.....<.......<<<..<<<<...>>>>
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<<<<<<<<......>>>>>>>>>................<<<<<<<....
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>>.>>>>.>>>.>>>>...<<<<<<<<<..>>>>>>>>>........>>>
>......<<<...(((>>>...>>>>>>>...<<<<..<<<.........
>>>..>>>>.<<<....>>>.>>))).......<<<<<<.(...>>>>..
.)>>>>>>............>>>>..]]>>>>.......<<<<.<...<<
<<<...<.........>...>>>>>....>>>>.>.......<<<<<.<<
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.....>.>>......<<<<<..>>>>>>>.<<<<<<...<<<<...<<<<
<<<<<<<<<<.<<<..>>>...<<<<...)))))..>>>>........>>
>>>>>>>..>>>>>...>>>>.>>>>>>..<<<.<..<<<<<........
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.>>>>>....<<<<<<<<<<<<.....<<<<....>>>>....>>>.>>>
>>>.>>>.....>>>....>>>>>>>>.....>>>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ywy Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi.
Resolution3.05 Å
Binding residue
(original residue number in PDB)
K114 P115 P127 F128 P131 M179 R180 M182 K184 K185 K186 R187 R188 C189 R190 K193 H194 V195 F196 S197 K198 H199 K200
Binding residue
(residue number reindexed from 1)
K30 P31 P43 F44 P47 M95 R96 M98 K100 K101 K102 R103 R104 C105 R106 K109 H110 V111 F112 S113 K114 H115 K116
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Cellular Component
GO:0005737 cytoplasm
GO:0005762 mitochondrial large ribosomal subunit
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:6ywy, PDBe:6ywy, PDBj:6ywy
PDBsum6ywy
PubMed33056988
UniProtQ6MVF2

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