Structure of PDB 6nbw Chain N Binding Site BS01

Receptor Information
>6nbw Chain N (length=167) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMSLAELTLEPVHRRPELLDACADLINDQWPRSRTSRLHSLGQSSDAFPL
CLMLLSPHPVVVGHARLSRVLNQPQSLLVETVVVARALRGRGFGRRLMEG
LEVFARARGFRKLHLTTHDQVHFYTHLGYQLGEPVQGLVFTSRRLPATLL
PPPPPLPEPIFWMEKDI
Ligand information
Ligand IDSOP
InChIInChI=1S/C24H40N7O17P3S/c1-13(32)9-52-7-6-26-15(33)4-5-27-22(36)19(35)24(2,3)10-45-51(42,43)48-50(40,41)44-8-14-18(47-49(37,38)39)17(34)23(46-14)31-12-30-16-20(25)28-11-29-21(16)31/h11-12,14,17-19,23,34-35H,4-10H2,1-3H3,(H,26,33)(H,27,36)(H,40,41)(H,42,43)(H2,25,28,29)(H2,37,38,39)/t14-,17-,18-,19+,23-/m1/s1
InChIKeyGAMKENBUYYJLCQ-NDZSKPAWSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(=O)CSCCNC(=O)CCNC(=O)[C@@H](C(C)(C)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O
OpenEye OEToolkits 1.5.0CC(=O)CSCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O
CACTVS 3.341CC(=O)CSCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23
ACDLabs 10.04O=C(C)CSCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O
CACTVS 3.341CC(=O)CSCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23
FormulaC24 H40 N7 O17 P3 S
Name[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL (3R)-3-HYDROXY-2,2-DIMETHYL-4-OXO-4-{[3-OXO-3-({2-[(2-OXOPROPYL)THIO]ETHYL}AMINO)PROPYL]AMINO}BUTYL DIHYDROGEN DIPHOSPHATE;
S-(2-OXOPROPYL)-COENZYME A
ChEMBL
DrugBank
ZINCZINC000085534446
PDB chain6nbw Chain N Residue 400 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6nbw Mechanism of actin N-terminal acetylation.
Resolution2.5 Å
Binding residue
(original residue number in PDB)
H76 Q104 T162 V163 V164 V165 R170 G171 R172 G173 G175 R176 T197 T198 Q201 F204 Y205 H207
Binding residue
(residue number reindexed from 1)
H1 Q29 T81 V82 V83 V84 R89 G90 R91 G92 G94 R95 T116 T117 Q120 F123 Y124 H126
Annotation score3
Enzymatic activity
Enzyme Commision number 2.3.1.-
Gene Ontology
Molecular Function
GO:0008080 N-acetyltransferase activity
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups

View graph for
Molecular Function
External links
PDB RCSB:6nbw, PDBe:6nbw, PDBj:6nbw
PDBsum6nbw
PubMed32284999
UniProtQ93015|NAA80_HUMAN N-alpha-acetyltransferase 80 (Gene Name=NAA80)

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