Structure of PDB 6awd Chain N Binding Site BS01

Receptor Information
>6awd Chain N (length=116) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFA
AQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITD
VTPIPHNGCRPPKKRR
Ligand information
>6awd Chain A (length=1539) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa
cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga
guggcggacgggugaguaaugucugggaaacugccugauggagggggaua
acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg
gggaccuucgggccucuugccaucggaugugcccagaugggauuagcuag
uaggugggguaacggcucaccuaggcgacgaucccuagcuggucugagag
gaugaccagccacacuggaacugagacacgguccagacuccuacgggagg
cagcaguggggaauauugcacaaugggcgcaagccugaugcagccaugcc
gcguguaugaagaaggccuucggguuguaaaguacuuucagcggggagga
agggaguaaaguuaauaccuuugcucauugacguuacccgcagaagaagc
accggcuaacuccgugccagcagccgcgguaauacggagggugcaagcgu
uaaucggaauuacugggcguaaagcgcacgcaggcgguuuguuaagucag
augugaaauccccgggcucaaccugggaacugcaucugauacuggcaagc
uugagucucguagagggggguagaauuccagguguagcggugaaaugcgu
agagaucuggaggaauaccgguggcgaaggcggcccccuggacgaagacu
gacgcucaggugcgaaagcguggggagcaaacaggauuagauacccuggu
aguccacgccguaaacgaugucgacuuggagguugugcccuugaggcgug
gcuuccggagcuaacgcguuaagucgaccgccuggggaguacggccgcaa
gguuaaaacucaaaugaauugacgggggcccgcacaagcgguggagcaug
ugguuuaauucgaugcaacgcgaagaaccuuaccuggucuugacauccac
ggaaguuuucagagaugagaaugugccuucgggaaccgugagacaggugc
ugcauggcugucgucagcucguguugugaaauguuggguuaagucccgca
acgagcgcaacccuuauccuuuguugccagcgguccggccgggaacucaa
aggagacugccagugauaaacuggaggaagguggggaugacgucaaguca
ucauggcccuuacgaccagggcuacacacgugcuacaauggcgcauacaa
agagaagcgaccucgcgagagcaagcggaccucauaaagugcgucguagu
ccggauuggagucugcaacucgacuccaugaagucggaaucgcuaguaau
cguggaucagaaugccacggugaauacguucccgggccuuguacacaccg
cccgucacaccaugggaguggguugcaaaagaaguagguagcuuaaccuu
cgggagggcgcuuaccacuuugugauucaugacuggggugaagucguaac
aagguaaccguaggggaaccugcgguuggaucaccuccu
.......<<<<<.[[((((>>>>>.<<<<.<<<<<..<<<<<.<......
<<<.<<<...<<..<<.<...<<.<<<<<.......>.>>>>..>>.>..
>>>>.......<<.......<<<<<<<..<<...<.<<<<<....<<...
.<<<<<......>>>>>......>>.......<<<....>>>....<<<<
<<..<<....>>>>>>>>.>>>>>.>..>>.>>>>>>><<<..<.<<<..
.<<<<<<.........>>>>>>.>>>....>.>>>..<<<<<<<<....>
>>...>>>>>.>>.<<<<<............>>>>>.<<<.<..>.>>>.
..>>>>>>.........<<...<<<<<<....>>>>.>>>>...>..>>>
>>..<<<<.......<<<....>>>......>>>>..<<.<<<<<.....
...<<<<<<<<.......>>>>>>>>..........>>>>>....>>.<<
<<<(((...<<<<<.....<..))).>.......>>>>>>>>>>..>>>>
>>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<
<<<<......<<<<<<.....>>>>>>....>>>>>>>..>>>>>>>>>>
...<<<<<<<<...<<<<<<<.....<<<<<<<.<.<<<......>>>..
...>>>>>>>.>...........<<....>>.>>>>>>>..>>>.>>>>>
...>>>...>>>>....<<<<<<...<<...<<<<.........>>>>..
.>>>>>>>>..........<<<<<<..<<<<<<.<<<<<.....>>>>>.
>>>>>>...<<..))>>.....>>>>>>.>>>.<<<.......<<.....
.>>.....>>>..)))).]]<<<<.<<<<<<<.....<<<<...<<<<<<
<<<<......<<........>>..........<<<<<<<......<<<<<
<<..<<<<<<......>>>>>>...<<....>>..>>>>>.>>..<<.<<
<..<<<<<<.......<<<<<.<<......>>..<<<<......>>>>..
.>>>>>.....<<<<.<<<<<<<...<...<<<.....>>>.>....>>>
>>>>.....<<<<<.....>>>>>........>>>>.........>>>..
.>>>>>>>>....>>>>>>>...>>.>>>>>>>>.....<<<<<<<....
.<<<..<....<<<....>>>....>....>>>.....>>>>>>>.....
......<<<<<<<........>>>>>>>...........>>>>.....<<
<<<<<.........>>>>>>>...........>>>>>>>>>>.>......
..<<.<.<<<<.<<...<<<<<<<<<<<<.<..<<<<<<.<<<<..<...
...>.>>>>>>>>>>..>>>>>>>>>>>>>...>>.>>>>..>.>>....
.....<<<<<<<.<<...>>>>>>>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6awd Structure of RNA polymerase bound to ribosomal 30S subunit.
Resolution8.1 Å
Binding residue
(original residue number in PDB)		N27 A40 W43 G47 R52 K56 K86 P116 H117 N118 G119 R121
Binding residue
(residue number reindexed from 1)		N16 A29 W32 G36 R41 K45 K75 P105 H106 N107 G108 R110
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0070181 small ribosomal subunit rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6awd, PDBe:6awd, PDBj:6awd
PDBsum6awd
PubMed29027901
UniProtP0A7R9|RS11_ECOLI Small ribosomal subunit protein uS11 (Gene Name=rpsK)

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