Structure of PDB 7a01 Chain M3 Binding Site BS01

Receptor Information
>7a01 Chain M3 (length=75) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQE
LLSKGLIKLVSKHRAQVIYTRNTKG
Ligand information
>7a01 Chain K3 (length=1801) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca
ugcaugucuaaguacgcacggccgguacagugaaacugcgaauggcucau
uaaaucaguuaugguuccuuuggucgcucgcuccucucccacuuggauaa
cugugguaauucuagagcuaauacaugccgacgggcgcugacccccuucg
cgggggggaugcgugcauuuaucagaucaaaaccaacccggucagccccu
ggcgggcgccggcggcuuuggugacucuagauaaccucgggccgaucgca
cgccccccguggcggcgacgacccauucgaacgucugcccuaucaacuuu
cgaugguagucgccgugccuaccauggugaccacgggugacggggaauca
ggguucgauuccggagagggagccugagaaacggcuaccacauccaagga
aggcagcaggcgcgcaaauuacccacucccgacccggggagguagugacg
aaaaauaacaauacaggacucuuucgaggcccuguaauuggaaugagucc
acuuuaaauccuuuaacgaggauccauuggagggcaagucuggugccagc
agccgcgguaauuccagcuccaauagcguauauuaaaguugcugcaguua
aaaagcucguaguuggaucuugggagcgggcgggcgcgcccguccccgcc
ccuugccucucggcgcccgggcccgaagcguuuacuuugaaaaaauuaga
guguucaaagcaggcccgagccgccuggauaccgcagcuaggaauaaugg
aauaggaccgcgguucuauuuuguugguuuucggaacugaggccaugauu
aagagggacggccgggggcauucguauugcgccgcuagaggugaaauucu
uggaccggcgcaagacggaccagagcgaaagcauuugccaagaauguuuu
cauuaaucaagaacgaaagucggagguucgaagacgaucagauaccgucg
uaguuccgaccauaaacgaugccgaccggcgaugcggcggcguuauuccc
augacccgccgggcagcuuccgggaaaccaaagucuuuggguuccggggg
gaguaugguugcaaagcugaaacuuaaaggaauugacggaagggcaccac
caggaguggagccugcggcuuaauuugacucaacacgggaaaccucaccc
ggcccggacacggacaggauugacagauugauagcucuuucucgauuccg
ugggugguggugcauggccguucuuaguugguggagcgauuugucugguu
aauuccgauaacgaacgagacucuggcaugcuaacuaguuacgcgacccc
cgagcggucggcgucccccaacuucuuagagggacaaguggcguucagcc
acccgagauugagcaauaacaggucugugaugcccuuagauguccggggc
ugcacgcgcgcuacacugacuggcucagcgugugccuacccuacgccggc
aggcgcggguaacccguugaaccccauucgugauggggaucggggauugc
aauuauuccccaugaacgaggaauucccaguaagugcgggucauaagcuu
gcguugauuaagucccugcccuuuguacacaccgcccgucgcuacuaccg
auuggaugguuuagugaggcccucggaucggccccgccggggucggccca
cggcccuggcggagcgcugagaagacggucgaacuugacuaucuagagga
aguaaaagucguaacaagguuuccguaggugaaccugcggaaggaucauu
a
...<<<<<.{.[[[[>>>>><<<.<<<<<<...<.<<.........<<<.
<<<...<....<......<..........>.....>.>.......<<...
.....<<<......<<......<....................<<.....
<<.............>>......>>.........<<<<...<<<<<....
..>>>>>...>>>>....<<<<<......(((((......<....<<...
....>>......>................>>>>>...........<<<<.
.<<<......>>>.>>>>...>......>>....>>>.<<<....<<<..
...<<<<<<.........>>>>>>.>>>......>>>...<<<.<<<<..
..>>>>....>>>.>>.<<.<<<..........>>>.>>.<.<<....>>
.>...>>>>>>.........<<<....<<<.....>>>..>>>......>
>.>.....<<.<<<<<<.<........>.>>.>>>>..>>....<.<<..
...............>>......>..<<<<<((......<<<<.....<<
..))>>.......>>>>.>>>>>..>>>>>>.>>>.........<.<[[.
....<.<<....<<.<<.....<<.<<<<<<<<<<..>>>>>..>>>>>>
>........<<<<.<<<<>>>>>>>>.....<<<<<<.<.......<<..
.<.......>..<<<.......>>>....>>......>.>>>..>>>...
.....<.....<<<.<.........)))))...>.>>>.....>....>>
....<<<<<<..<...<<<<..<<..<<<<<<<<...<<<......>>>.
.....>>>>>>>>..>>.......<<....>>...>>>>..>..>>>.>>
>...>>....>>.>....<<<<<<<...<...<<<<.........>>>>.
..>>>>>>>>..........<<<.<<.<<<..<.<<<<<<.<<<<.....
.>>>>>>>>>>.>..>>>...<<..]]>>...>>.....>>>.>.>.<<<
......<<<<....>>>>....>>>..]]]].}<<<<<.<<<<<<<..<<
..<<<<...<<<.<<<<<<.......<........>...........<<<
<<.<....<<<<<........<<..<<........>>.>>.......>>>
>>...<<.<<<..<<.<<<<<<....<<<.<<<<......>>...<<<..
....>>>...>>.>>>....<<<.......<<.....<<.....<<.<<.
.<......>>>..>>.....>>.....>>........<<<<<.....>>>
>>........>>>....>>>.>>>.....>>>>>>>.....>.>>>>>..
.>>.>>>>.>>>.....<<.<<<................<<<.<<<<...
.>>>>.>>>..............>>>.>>......<.....<<<<<....
......>>>>>.....>......>>>>......<<<<<<<.......>>>
>>>>.......>>...>>>>>>>>>>.>>.......<<.<..<<<<.<<.
...<<<<<<<<.<<<..<<<<.<<...<<<<<.<<<<<<<..<.......
..>..>>>>>>>...>>>>>...>>.>>>>..>>>.>>>>>>>>...>>.
>>>>...>.>>.........<<<<<<<<<....>>>>>>>>>........
.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7a01 The Halastavi arva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism.
Resolution3.6 Å
Binding residue
(original residue number in PDB)
R41 K43 R80 G81 S82 R85 R104
Binding residue
(residue number reindexed from 1)
R1 K3 R40 G41 S42 R45 R64
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7a01, PDBe:7a01, PDBj:7a01
PDBsum7a01
PubMed33296660
UniProtG1TDB3|RS25_RABIT Small ribosomal subunit protein eS25 (Gene Name=RPS25)

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