Structure of PDB 8b2l Chain M1 Binding Site BS01

Receptor Information
>8b2l Chain M1 (length=52) Species: 4097 (Nicotiana tabacum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTARGPN
SS
Ligand information
>8b2l Chain h1 (length=1626) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcauguguaaguaugaacaaauucagacugugaaacugcgaauggcuc
auuaaaucaguuauaguuuguuugaugguaucuacuacucggauaaccgu
aguaauucuagagcuaauacgugcaacaaaccccgacuucuggaagggau
gcauuuauuagauaugcgaugauucaugauaacucgacggaucgcacggc
cgccggcgacgcaucauucaaauuucugcccuaucaacuuucgaugguag
gauaguggccuaccaugguggugacgggugacggagaauuaggguucgau
uccggagagggagccugagaaacggcuaccacauccaaggaaggcagcag
gcgcgcaaauuacccaauccugacacggggagguagugacaauaaauaac
aauaccggcugguaauuggaaugaguacaaucuaaaucccuuaacgagga
uccauuggagggcaagucuggugccagcagccgcgguaauuccagcucca
auagcguauauuuaaguuguugcaguuaaaaagcucguaguuggacuuug
ggaugucccguuacuuugaagaaauuagagugcucaaagcaagccuacgc
ucuguauacauuagcaugggauaacauuauaggauuucgguccuauuucg
ggaucggaguaaugauuaacagggacagucgggggcauucguauuucaua
gucagaggugaaauucuuggauuuaugaaagacgaacaacugcgaaagca
uuugccaaggauguuuucauuaaucaagaacgaaaguugggggcucgaag
acgaucagauaccguccuagucucaaccauaaacgaugccgaccagggau
cggcggauguugcuaggacuccgccggcaccuuaugagaaaucaaaguuu
uuggguuccggggggaguauggucgcaaggcugaaacuuaaaggaauuga
cggaagggcaccaccaggaguggagccugcggcuuaauuugacucaacac
ggggaaacuuaccagguccagacauaguaaggauugacagacugagagcu
cuuucuugauucuaugggugguggugcauggccguucuuaguugguggag
cgauuugucugguuaauuccguuaacgaacgagaccucagccugcuaacu
agcuaugcggagguaucccuucgcggccagcuucuuagagggacuacggc
cuuuuaggccgcggaaguuugaggcaauaacaggucugugaugcccuuag
auguucugggccgcacgcgcgcuacacugauguauucaacgaguuuauag
ccuuggccgacaggcccggguaaucuuugaaauuucaucgugauggggau
agaucauugcaauuguuggucuucaacgaggaauuccuaguaagcgcgag
ucaucagcucgcguugacuacgucccugcccuuuguacacaccgcccguc
gcuccuaccgauugaaugauccggugaaauguucggaucgcgcgagaagu
ccauugaaccuuaucauuuagaggaaggagaagucguaacaagguuuccg
uaggugaaccugcggaaggaucauug
...<<<<<.[.((((>>>>>.<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<...........>>...>>.>>......<<.
.......<<<..<<..<<....<<<<<............<<.....<..<
<<.....>>>..>......>>........<.<<<..<<...>>..>>>.>
..<.<<<<<<................>>>>>>.>.......<<<<.<<<<
.>>>>>>>>..>>>>>...>>>>..>>>.<<<....<<<....<<<<<<<
<.......>>>>>>>>>>>......>>>...<<<.<<<<....>>>>...
.>>>.>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>
>>.........<<<....<<<.....>>>..>>>..>....>.>.....<
<<<<<<<..>>>>>.>>>......<<..<...........>..>>.....
....<<<<<((....<.<<<<.....<<..))>>.......>>>>>>>>>
>..>>>>>>>>>..........<.<((.....<.<<...<<<.<<.....
<<<..>>>.<<<<<<.<<.......<<...<.......>..<<<....>>
>.....>>......>>.>>..>>>>........<<<<<<<<<<<.....>
>>>>>>>>>>.....>>....<<<<<<.<<...<<<<..<<..<<<<<<<
<...<<<......>>>......>>>>>>>>..>>.......<<....>>.
..>>>>...>>>>>.>>>...>>>...>>.>....<<<<<<<...<...<
<<<.<.....>.>>>>...>>>>>>>>..........<<<.<<.<<<..<
<<<<<<<.<<<.<..>>>>>>>>>>>>..>>>...<<..))>>...>>..
...>>>.>.>.<<<......<<<<....>>>>....>>>..)))).]<<<
<<.<<<<<<<..<<.<<<<<<..<<<.<<<<<.......<<........>
>..........<<<<<......<<<<<........<<.<<<........>
>>.>>......>>>>>...<<.<<<..<<.<<<<<<....<<<.<<<<..
....>>...<<<......>>>...>>.>>>....<<<<<.<<..<<<<..
<<<<.<<<<<<<<....>>>>>>>>...>>>>..>>>>.>>.....<<<<
<.....>>>>>........>>>>>....>>>.>>>.....>>>>>>>...
....>>>>>....>.>>>>.>>>.....<<<<.<.......<<.......
<<<.<<<<....>>>>.>>>....>>.......>.>>>>......<....
<<<<<<..........>>>>>>....>.....>>>>>>....<<<<<<<<
.......>>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<
.<<<<<.<<....<<<<<<<..<<<..<<<<..<...<<<<>>>>...>.
.>>>>..>>>..>>>>>>>...>>.>>>>>..>.>>...>.....<<<<<
<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
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PDB8b2l Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		H5 R10 A11 K13 V14 R15 T18 V21 K23 Q24 D25 K26 K27 K28 P30 R31 R33 A34 R37 N41 R42 T46 P57 N58 S60
Binding residue
(residue number reindexed from 1)		H4 R9 A10 K12 V13 R14 T17 V20 K22 Q23 D24 K25 K26 K27 P29 R30 R32 A33 R36 N40 R41 T45 P49 N50 S52
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005829 cytosol
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8b2l, PDBe:8b2l, PDBj:8b2l
PDBsum8b2l
PubMed37156858
UniProtA0A1S3XGJ0

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