Structure of PDB 9bct Chain M Binding Site BS01

Receptor Information
>9bct Chain M (length=648) Species: 311400 (Thermococcus kodakarensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MIRRETFVDDILKEIREIIVQMVPREAGITDVEFEGPELVIYVKNPEAMM
KDGELIKNLAKVLKKRISVRPDPDILLPPEKAEELIKQLVPPEAEITNIS
FDPSVGEVLIEARKPGLVIGKNGETLRLITQKVHWAPRVVRTPPIQSQTI
YSIRSILQTESKDRRKFLRQVGRNIYRKSEYKSRWIRITGLGGFREVGRS
ALLVQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLDAII
ITHAALDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNG
VEPLYRPKDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHL
HIGNGLHNIAITGDFKFIPTRLFEPAVSRFPRLETLVMESTYGGSNDYQM
PREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIE
VPIYLDGMIWEATAIHTAYPEYLSKHIREQIFHEGYNPFLNPIFKSVANS
RERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAE
GTLGRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGAADRRELMSY
VARVRPRPERIITVHGEAHKCLDLSSSIHKKFGISTRAPNNLDAIRLK
Ligand information
>9bct Chain 7 (length=29) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucuuauuuuuuuucuauuuugcgccgacc
.............................
Receptor-Ligand Complex Structure
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PDB9bct Structural basis of archaeal FttA-dependent transcription termination
Resolution2.5 Å
Binding residue
(original residue number in PDB)		I56 K57 K64 K65 R66 I67 K114 G116 I119 G120 N122 R141 V325 R326 D327 R333 H351 G355 N358 R382 F482
Binding residue
(residue number reindexed from 1)		I56 K57 K64 K65 R66 I67 K114 G116 I119 G120 N122 R141 V325 R326 D327 R333 H351 G355 N358 R382 F482
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0004527 exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006353 DNA-templated transcription termination

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Molecular Function
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Biological Process
External links
PDB RCSB:9bct, PDBe:9bct, PDBj:9bct
PDBsum9bct
PubMed
UniProtQ5JH24|FTTA_THEKO Transcription termination factor FttA (Gene Name=fttA)

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