Structure of PDB 8ys2 Chain M Binding Site BS01

Receptor Information
>8ys2 Chain M (length=79) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KCEPSQFQCTNGRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNN
GQCVPSRWKCDGDPDCEDGSDESPEQCHM
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8ys2 Chain M Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ys2 The receptor VLDLR binds Eastern Equine Encephalitis virus through multiple distinct modes.
Resolution5.2 Å
Binding residue
(original residue number in PDB)		W50 C52 D53 D55 D57 D63 E64
Binding residue
(residue number reindexed from 1)		W19 C21 D22 D24 D26 D32 E33
Annotation score4
External links
PDB RCSB:8ys2, PDBe:8ys2, PDBj:8ys2
PDBsum8ys2
PubMed39127734
UniProtP98155|VLDLR_HUMAN Very low-density lipoprotein receptor (Gene Name=VLDLR)

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