Structure of PDB 8wuw Chain M Binding Site BS01

Receptor Information
>8wuw Chain M (length=529) Species: 608538 (Hydrogenobacter thermophilus TK-6) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AAKKVIYGEDARARLKAGVDKLANAVKVTLGPRGREVIIEKKWGTPVVTK
DGVTVAKEIEFKDPYENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIFN
EGLRAIASGANPMDIKRGIDKAVETVVNEIKKLSIPVSGRKEIEQVATIS
ANNDATIGKIIADAMEAVGKDGVITVEESKSAETTLETVQGMQFDRGYLS
PYFVTNPDKMEAVLEDPFILIYEKKISNVKDLLPVLENVVRAGKPLLIIA
EDVEAEALATLVVNHIKGVIRACAVKAPGFGQRRKDYLQDIAILTGGTAI
TEELGIKLESVTLDMLGRADKVIVDKDNTTIVGGKGSKEAIQARIEQIKR
QILETTSDYDREKLQERLAKLSGGVAIIRVGAATEAELKEKKARVEDAVH
ATKAAVEEGIVPGGGVALVRASEALDNLKVDNADQQLGIDIIKKACRTPI
RQIAANSGFEGYVVLEKVLQLGKEKGKNWGFDAGVGDYKDMVEAGIIDPT
KVVRVAIQNAASVAGTMLTAEALVAEIPE
Ligand information
Ligand IDANP
InChIInChI=1S/C10H17N6O12P3/c11-8-5-9(13-2-12-8)16(3-14-5)10-7(18)6(17)4(27-10)1-26-31(24,25)28-30(22,23)15-29(19,20)21/h2-4,6-7,10,17-18H,1H2,(H,24,25)(H2,11,12,13)(H4,15,19,20,21,22,23)/t4-,6-,7-,10-/m1/s1
InChIKeyPVKSNHVPLWYQGJ-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)O)N
CACTVS 3.370Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)[CH](O)[CH]3O
CACTVS 3.370Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)[C@@H](O)[C@H]3O
ACDLabs 12.01O=P(O)(O)NP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.7.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(NP(=O)(O)O)O)O)O)N
FormulaC10 H17 N6 O12 P3
NamePHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
ChEMBLCHEMBL1230989
DrugBank
ZINCZINC000008660410
PDB chain8wuw Chain M Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8wuw Structural insights into thermophilic chaperonin complexes.
Resolution2.6 Å
Binding residue
(original residue number in PDB)		L31 G32 P33 V54 D87 G88 T89 T90 T91 G414 G415 D483 A484 I497 D499
Binding residue
(residue number reindexed from 1)		L30 G31 P32 V53 D86 G87 T88 T89 T90 G413 G414 D482 A483 I496 D498
Annotation score4
Enzymatic activity
Enzyme Commision number 5.6.1.7: chaperonin ATPase.
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016853 isomerase activity
GO:0051082 unfolded protein binding
GO:0140662 ATP-dependent protein folding chaperone
Biological Process
GO:0006457 protein folding
GO:0009408 response to heat
GO:0042026 protein refolding
GO:0051085 chaperone cofactor-dependent protein refolding
Cellular Component
GO:0005737 cytoplasm
GO:1990220 GroEL-GroES complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8wuw, PDBe:8wuw, PDBj:8wuw
PDBsum8wuw
PubMed38492570
UniProtD3DK86

[Back to BioLiP]