Structure of PDB 8bdb Chain M Binding Site BS01

Receptor Information

>8bdb Chain M (length=479) Species: 42003 (Griffithsia monilis)

SVEERTRIKNERYESGVIPYAKMGYWDPNYAVKDTDILALFRVSPQPGVD
PVEASAAVAGESSTATWTVVWTDLLTACDLYRAKAYKVESVPNTSDQYFA
YISYDIDLFEEGSIANLTASIIGNVFGFKAVKALRLEDMRIPVAYLKTFQ
GPATGIVVERERMDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDF
LKDDENINSQPFMRWKERFLYSIEAVNRSIAATGEVKGHYMNVTAATMEE
MYERAEFAKQLGTVIIMIDLVIGYTAIQTMGIWARKNDMILHLHRAGNST
YSRQKIHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPLMIRGFYNTLL
LPYLEVNLPQGIFFQQDWASLRKVTPVASGGIHCGQMHQLLDYLGNDVVL
QFGGGTIGHPDGIQAGATANRVALESMVIARNEGRDYVAEGPQILRDAAK
TCGPLQTALDLWKDITFNYTSTDTADFVE

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 8bdb Chain M Residue 501

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8bdb Grafting Rhodobacter sphaeroides with red algae Rubisco to accelerate catalysis and plant growth.
• Resolution: 1.7 Å
• Binding residue (original residue number in PDB): K205 D207 E208
• Binding residue (residue number reindexed from 1): K202 D204 E205
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 4.1.1.39: ribulose-bisphosphate carboxylase.

Gene Ontology

Molecular Function

• GO:0000287 magnesium ion binding
• GO:0004497 monooxygenase activity
• GO:0016829 lyase activity
• GO:0016984 ribulose-bisphosphate carboxylase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0015977 carbon fixation
• GO:0015979 photosynthesis
• GO:0019253 reductive pentose-phosphate cycle

Cellular Component

• GO:0009507 chloroplast

External links

• PDB: RCSB:8bdb, PDBe:8bdb, PDBj:8bdb
• PDBsum: 8bdb
• PubMed: 37291398
• UniProt: A7UM67