Structure of PDB 7pas Chain M Binding Site BS01

Receptor Information
>7pas Chain M (length=60) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKKSLKVKQTRIPKFAVRAYTRCQRCGRARAVLSHFGVCRLCFRELAYAG
AIPGVKKASW
Ligand information
>7pas Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>.<<<<.<<<<<..<<<<<<<<.<....<
.......<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<<<<<..<<...<...<<<.<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<<<<<<....>>>>>>>>>....<<<<<<...
.>>>>>>.>>>...>..>>>>>>>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.
>>.<<<<<............>>>>>.<<<<<..>>>>>.......>..>.
......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...
....<<<.....>>>......>>>>.......<<<........<<<<<<<
<........>>>>>>>>.........>>>..........<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>....
......<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<.....
<<<<<<<.....>>>>>>>..>>>>>>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<.<<<..<<........>>.....>>>.>>>
>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>...>
>>>...<<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>.
.>.......<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<......<<<<<....>>>>>....>>..
..))).]<<<<<..<<<<<<.<<..<<<<...<<<<<.<<<<......<<
........>>..........<<<<<<<......<<<<<........<<<<
....>>>>.....>>>.>>.<<<.<<<..<<<<<<.<.....<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<.<..
.........>.>>>>.....<<<<<....>>>>>........>>>>....
.>...>>>...>>>>>>>>>...>>>>>>>...>>.>>.>>>>>.....<
<<<<<<.....<<<..<<..<<<<....>>>>..>>....>>>....>>>
>>>>......<..<.<<<<<<..........>>>>>>>...>......>>
>>.....<<<<<<<..........>>>>>>>......>>...>>>>>>.>
>>.>>....<.<.<...<<<<.<<...<<<<<<.....<.....<<<<<<
.<<<..<<....>>.>>>>>>>>>...>......>>>>>>...>>.>>>>
....>>...>.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7pas Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution16.0 Å
Binding residue
(original residue number in PDB)		A2 K3 K4 S5 L6 V8 K9 R12 P14 K15 F16 V18 R19 A20 Y21 T22 R23 R26 C27 R29 R31 A32 V33 S35 H36 R41 C43 R45 E46 Y49 K58 A59 S60 W61
Binding residue
(residue number reindexed from 1)		A1 K2 K3 S4 L5 V7 K8 R11 P13 K14 F15 V17 R18 A19 Y20 T21 R22 R25 C26 R28 R30 A31 V32 S34 H35 R40 C42 R44 E45 Y48 K57 A58 S59 W60
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0019843 rRNA binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pas, PDBe:7pas, PDBj:7pas
PDBsum7pas
PubMed36171285
UniProtQ50305|RS14Z_MYCPN Small ribosomal subunit protein uS14 (Gene Name=rpsZ)

[Back to BioLiP]