Structure of PDB 7jfo Chain M Binding Site BS01

Receptor Information

>7jfo Chain M (length=444) Species: 3055 (Chlamydomonas reinhardtii)

KDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWT
TVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMF
TSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGR
GLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDR
FLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMH
DYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKA
LRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQD
WCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGA
AANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEV

Ligand information

>7jfo Chain v (length=22) Species: 3055 (Chlamydomonas reinhardtii)

RVSPTRSVLPANWRQELESLRN

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7jfo The structural basis of Rubisco phase separation in the pyrenoid.
• Resolution: 2.13 Å
• Binding residue (original residue number in PDB): N432 E433
• Binding residue (residue number reindexed from 1): N415 E416

Enzymatic activity

• Catalytic site (original residue number in PDB): K175 K201 D202 D203 E204 H294 H327 K334
• Catalytic site (residue number reindexed from 1): K158 K184 D185 D186 E187 H277 H310 K317
• Enzyme Commision number: 4.1.1.39: ribulose-bisphosphate carboxylase.

Gene Ontology

Molecular Function

• GO:0000287 magnesium ion binding
• GO:0004497 monooxygenase activity
• GO:0016829 lyase activity
• GO:0016984 ribulose-bisphosphate carboxylase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0009853 photorespiration
• GO:0015977 carbon fixation
• GO:0015979 photosynthesis
• GO:0019253 reductive pentose-phosphate cycle

Cellular Component

• GO:0009507 chloroplast

External links

• PDB: RCSB:7jfo, PDBe:7jfo, PDBj:7jfo
• PDBsum: 7jfo
• PubMed: 33230314
• UniProt: P00877|RBL_CHLRE Ribulose bisphosphate carboxylase large chain (Gene Name=rbcL)