Structure of PDB 7aod Chain M Binding Site BS01

Receptor Information
>7aod Chain M (length=1384) Species: 284812 (Schizosaccharomyces pombe 972h-) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNIAQPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLY
DLALGPYLKNSVCATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLR
STCLYCHHFKLSKVKVHLFFCRLKLLDYGLLNESEMVENVSLAKDAATLM
RIRDEFVAKSIADSRQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSP
NFRKEGFAKIFEIPLSGKNLQFKYMTSTEVRNHLRRLFVKENVVLSRLYP
ASADMFFLQNIAVPPTRFRPNIQNELLTRILQSSIQIASLSKDSTVEERR
SRAFELLINAFVQLQHDVNSLIDSNRNPPPGIKQILEKKEGLFRKHMMGK
RVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVI
NGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYS
YSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRM
HYANCNSYNADFDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPL
RGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPDETGMYGRIKTLPP
AIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPGKYWSPDSEEG
SVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLF
TAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTD
SPIALLNANLEEVYRDDEKLQGLDAAMKGKMNGLTSSIINKCIPDGLLTK
FPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSF
VPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDTGYLQRCLMKH
LEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSL
IQKYKVKSVLSAVDSETASSYAKKALKKPYKYDPVLDKYPPSRYLGSVSE
KFQRAVDEYTQKNPDKLIAESKLDDSLLNESKFKALMQLRYQQSLVDPGE
SVGVLASQSIGEPSTQMTLNTNVTLGIPRLREIIMTASANIQTPTMTLRL
NDGVSDKRASAFCKEVNKLVLSEVVRQVRVTEKTYAIRLDLYSRDEYQDE
YGVLQEEIESTFSNRFLKILNRIIKSYLAKSKQNCKHLDFDYVNGEWATV
ELVFPINTEKLLMVSLVEKACSETVIHEIPGITRCFSKPDTVPKVITEGV
NLKAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYG
IAVDPRHLSLIADYMTFEGGYKAFNRMGIEYNTSPFAKMSFETTCHFLTE
AALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIFT
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7aod Chain M Residue 1701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7aod Conserved strategies of RNA polymerase I hibernation and activation.
Resolution4.5 Å
Binding residue
(original residue number in PDB)		C63 C66 H76
Binding residue
(residue number reindexed from 1)		C63 C66 H76
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0001054 RNA polymerase I activity
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0005515 protein binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
GO:0006362 transcription elongation by RNA polymerase I
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005736 RNA polymerase I complex
GO:0005829 cytosol

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7aod, PDBe:7aod, PDBj:7aod
PDBsum7aod
PubMed33536435
UniProtP15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 (Gene Name=rpa1)

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