Structure of PDB 6yal Chain M Binding Site BS01

Receptor Information
>6yal Chain M (length=98) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQ
SLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSR
Ligand information
>6yal Chain 2 (length=1744) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca
ugcaugucuaaguacgcacggccgguacagugaaacugcgaauggcucau
uaaaucaguuaugguuccuuuggucgccuacuuggauaacugugguaauu
cuagagcuaauacaugccgacggcgcugacucccuuugugugggaugcgu
gcauuuaucagaucaaaaccaacccggucggcggcuuuggugacucuaga
uaaccucgggccgaucgcagcccuccguggcggcgacgacccauucgaac
gucugcccuaucaacuuucgaugguagucgccgugccuaccauggugacc
acgggugacggggaaucaggguucgauuccggagagggagccugagaaac
ggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccacucccga
cccggggagguagugacgaaaaauaacaauacaggacucuuucgaggccc
uguaauuggaaugaguccacuuuaaauccuuuaacgaggauccauuggag
ggcaagucuggucgcagcagccgcgguaauuccagcuccaauagcguaua
uuaaaguugcugcaguuaaaaagcucguaguuggaucuuguggaggguuc
cccgccccuugccucucggcgccggcccgaagcguuuacuuugaaaaaau
uagaguguucaaagcaggcccgagccgccuggauaccgcagcuaggaaua
auggaauaggaccgcgguucuauuuuguugguuuucggaacugaggccau
gauuaagagggacggccgggggcauucguauugcgccgcuagaggugaaa
uucuuggaccggcgcaagacggaccagagcgaaagcauuugccaagaaug
uuuucauuaaucaagaacgaaagucggagguucgaagacgaucagauacc
gucguaguuccgaccauaaacgaugccgacuggcgaugcggcggcguuau
ucccaugacccgccgggcagcuuccgggaaaccaaagucuuuggguuccg
gggggaguaugguugcaaagcugaaacuuaaaggaauugacggaagggca
ccaccaggaguggagccugcggcuuaauuugacucaacacgggaaaccuc
acccggcccggacacggacaggauugacagauugauagcucuuucucgau
ucugugggugguggugcauggccguucuuaguugguggagcgauuugucu
gguuaauuccgauaacgaacgagacucuggcaugcuaacuaguuacgcga
cccccgagcggucggcgucccccaacuucuuagagggacaaguggcguuc
agccacccgagauugagcaauaacaggucugugaugcccuuagaugucgg
ggcugcacgcgcgcuacacugacuggcucagcgugugccuacccuacgcc
ggcaggcgcggguaacccguugaaccccauucgugauggggaucggggau
ugcaauuauuccccaugaacgaggaauucccaguaagugcgggucauaag
cuugcguugauuaagucccugcccuuuguacacaccgcccgucgcuacua
ccgauuggaugguuuagugaggcccucggaucggcccgccggggugcccu
ggcggagcgcugagaagacggucgaacuugacuaucuagaggaaguaaaa
gucguaacaagguuuccguaggugaaccugcggaaggaucauua
...<<<<<...[[[[>>>>>[[[.((((((.....{{.........[[[.
[[[..<<....<<....<<..........>>...>>.>>......{{...
.....[[[......{{....[[[.........<<.....<<.<<<.....
>>>.>>......>>.........<<<...<<.<......>.>>...>>>.
[[..(((((.....<<<<<<<<<<<<.....>>>....<......>..))
)))......]]...<<<<.<<<......>>>.>>>>....]]]...}}..
..]]].<<<....<<<....<<<<<<<.........>>>>>>>>>>....
..>>>...<<<.<<<<....>>>>....>>>.}}.<<.<<<.........
.>>>.>>.<.<<....>>.>...]]]]]].........<<<....<<<<.
..>>>>..>>>......}}.......<<<<<<.<<.<<<....>>>.>>.
.>>>.>>>......<<..<...........>..>>.........<<<<<(
(......<<<<.....<<..))>>.......>>>>.>>>>>..)))))).
]]]............{{.......{{...[[[.[[....<<<<.<<...>
>>>>>........<......<<..>>....>....<<<<<<.<.......
<<...<.......>.<<<<.......>>>>...>>......>.>>>..>>
>.......[[....(((((((.....>>>>>>>>>.)))))))...]]..
..]]....<<<<<<..<...<<<<..<<..<<<<<<<<...<<<......
>>>......>>>>>>>>..>>.......<<....>>...>>>>..>..>>
>.>>>...]]]...}}......<<<<<<<...<...<<<<.<.....>.>
>>>...>>>>>>>>..........<<<.<<.<<<..<.<<<<<<.<<<<.
.....>>>>>>>>>>.>..>>>...<<..}}>>...>>.....>>>....
.<<<......<<<<....>>>>....>>>..]]]]..<<<<<.<<<<<<<
..<<..<<<<<..<<<.<<<<<<......<<........>>.........
.<<<<<......<<<<<<.......<<.<<<........>>>.>>.....
>>>>>>...<<.<<<..<<<<<<<<<....<<<.<<<<<....>>>...<
<<......>>>...>>.>>>....<<<...<...<<<<..<<<<....<<
<..<<<<....>>>>.>>>....>>>>..>>>>..>.....<<<<<....
.>>>>>........>>>....>>>.>>>...>.>>>>>>>......>>>>
>...>>.>>>>.>>>.....<<.<<<........<.......<<<.<<<<
....>>>>.>>>....>.........>>>.>>......<.....<<<<<.
.........>>>>>.....>.....>>>>>.....<<<<<<<<.......
>>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<..<<<<.
<<....<<<<<<<<.<<<..<<<<.<<...<<<<<.<<<<<<<<..>>>>
>>>.>...>>>>>...>>.>>>>..>>>.>>>>>>>>...>>.>>>>...
>.>>...>.....<<<<<<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6yal Structural Insights into the Mammalian Late-Stage Initiation Complexes.
Resolution3.0 Å
Binding residue
(original residue number in PDB)
M1 L2 M3 K5 R8 L43 S51 S54 R55 F62
Binding residue
(residue number reindexed from 1)
M1 L2 M3 K5 R8 L43 S51 S54 R55 F62
Enzymatic activity
Enzyme Commision number ?
External links