Structure of PDB 8yop Chain Ll Binding Site BS01 |
|
>8yop Chain L5 (length=3771)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
cgcgaccucagaucagacguggcgacccgcugaauuuaagcauauuaguc agcggaggagaagaaacuaaccaggauucccucaguaacggcgagugaac agggaagagcccagcgccgaauccccgccccgcggcggggcgcgggacau guggcguacggaagacccgcuccccggcgccgcucguggggggcccaagu ccuucugaucgaggcccagcccguggacggugugaggccgguagcggccc ccggcgcgccgggcccgggucuucccggagucggguugcuugggaaugca gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac cgauagucaacaaguaccguaagggaaaguugaaaagaacuuugaagaga gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg caguccgcccggaggauucaacccggcggcggguccggccgugucggcgg cccggcggaucuuucccgcgcgggggaccgucccccgaccggcgaccggc cgccgccgggcgcauuuccaccgcggcggugcgccgcgaccggcuccggg acggcugggaaggcccggcggggaagguggcucgggggcccccgaguguu acagcccccccggcagcagcacucgccgaaucccggggccgagggagcga gacccgucgccgcgcucuccccccucccggcgcgccggggggggccgggc caccccucccacggcgcgaccgcucggggcggacuguccccagugcgccc cgggcgggucgcgccgucgggcccgggggaggccacgcgcgcgucccccg aagagggggacggcggagcgagcgcacggggucggcggcgacgucggcua cccacccgacccgucuugaaacacggaccaaggagucuaacacgugcgcg agucgggggcucgcacgaaagccgccguggcgcaaugaaggugaaggccg gcgcgcucgccggccgaggugggaucccgaggccucuccaguccgccgag ggcgcaccaccggcccgucucgcccgccgcgccggggagguggagcacga gcgcacguguuaggacccgaaagauggugaacuaugccugggcagggcga agccagaggaaacucugguggagguccguagcgguccugacgugcaaauc ggucguccgaccuggguauaggggcgaaagacuaaucgaaccaucuagua gcugguucccuccgaaguuucccucaggauagcuggcgcucucgcagacc cgacgcgccacgcaguuuuauccgguaaagcgaaugauuagaggucuugg ggccgaaacgaucucaaccuauucucaaacuuuaaauggguaagaagccc ggcucgcuggcguggagccgggcguggaaugcgagugccuagugggccac uuuugguaagcagaacuggcgcugcgggaugaaccgaacgccggguuaag gcgcccgaugccgacgcucaucagaccccagaaaagguguugguugauau agacagcaggacgguggccauggaagucggaauccgcuaaggagugugua acaacucaccugccgaaucaacuagcccugaaaauggauggcgcuggagc gucgggcccauacccggccgucgccggcagucgagaguggacgggagcgg cggcccggagccccgcggacgcuacgccgcgacgaguaggagggccgcug cggugagccuugaagccuagggcgcgggcccggguggagccgccgcaggu gcagaucuuggugguaguagcaaauauucaaacgagaacuuugaaggccg aaguggagaaggguuccaugugaacagcaguugaacaugggucagucggu ccugagagaugggcgagcgccguuccgaagggacgggcgauggccuccgu ugcccucggccgaucgaaagggagucggguucagauccccgaauccggag uggcggagaugggcgccgcgaggcguccagugcgguaacgcgaccgaucc cggagaagccggcgggagccccggggagaguucucuuuucuuugugaagg gcagggcgcccuggaauggguucgccccgagagaggggcccgugccuugg aaagcgucgcgguuccggcggcguccggugagcucucgcuggcccuugaa aauccgggggagaggguguaaaucucgcgccgggccguacccauauccgc agcaggucuccaaggugaacagccucuggcauguuggaacaauguaggua agggaagucggcaagccggauccguaacuucgggauaaggauuggcucua agggcugggucggucgcggccggcgccuagcagccgacuuagaacuggug cggaccaggggaauccgacuguuuaauuaaaacaaagcaucgcgaaggcc cgcggcggguguugacgcgaugugauuucugcccagugcucugaauguca aagugaagaaauucaaugaagcgcggguaaacggcgggaguaacuaugac ucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcaugaa uggaugaacgagauucccacugucccuaccuacuauccagcgaaaccaca gccaagggaacgggcuuggcggaaucagcggggaaagaagacccuguuga gcuugacucuagucuggcacggugaagagacaugagagguguagaauaag ugggaggcccccggcgcccccccgguguccccgcgaggggcccggggcgg gguccgccggcccugcgggccgccggugaaauaccacuacucugaucguu uuuucacugacccggugaggcgggggggcgagccccgaggggcucucgcu ucuggcgccaagcgcccggccgcgcgccggccgggcgcgacccgcuccgg ggacagugccagguggggaguuugacuggggcgguacaccugucaaacgg uaacgcagguguccuaaggcgagcucagggaggacagaaaccucccgugg agcagaagggcaaaagcucgcuugaucuugauuuucaguacgaauacaga ccgugaaagcggggccucacgauccuucugaccuuuuggguuuuaagcag gaggugucagaaaaguuaccacagggauaacuggcuuguggcggccaagc guucauagcgacgucgcuuuuugauccuucgaugucggcucuuccuauca uugugaagcagaauucaccaagcguuggauuguucacccacuaauaggga acgugagcuggguuuagaccgucgugagacagguuaguuuuacccuacug augauguguuguugccaugguaauccugcucaguacgagaggaaccgcag guucagacauuugguguaugugcuuggcugaggagccaauggggcgaagc uaccaucugugggauuaugacugaacgccucuaagucagaaucccgccca ggcggaacgauacggcagcgccgcggagccucgguuggccucggauagcc ggucccccgccgggguccggugcggagugcccuucguccugggaaacggg gcgcggccggagaggcggccgcccccucgcccgucacgcaccgcacguuc guggggaaccuggcgcuaaaccauucguagacgaccugcuucugggucgg gguuucguacguagcagagcagcucccucgcugcgaucuauugaaaguca gcccucgacacaaggguuugu |
.........................<<<<<<.....<......>...... >>>>>.>.........<<....>>..<<<<<<.....<<.....>>.... >>>>>>..<<<..<<<<<...<<<<<<<<<<.....>>>>>>.>>>>... ..>>>>>..<<<<<<<<<<...<<<<<<<.<<......<<<<<<<<.... <<<<......>>>>.....((......<<<.....))>>>...>.>>>>> >>..>>>>>>>>>..>>>>>>>>>>.......<<<<<<<........>>> >>>>.....<<<<<..((((((>>>>>..>>>.................. ................<<....>>...............<<<<....>>> >..................................<<<<<<<<..<<<.< <...<<<<<<<<.<<<.....<<<<<<<<<<<..<<<<<<<...<<..<< ....<<<<.<<<..<<<<..>>>>>>>>>>>>>..>>..>>>>...>>>> >>>>>>>>>>......>>>.>>>.>>>>>...<<<<<<<<<<<<<<<<<< <<<<<...<<..<<<.<..<<<<......<<<<<<<<..>>>>>>>>... ....>>>>..>>>>........>>>>>>..>>>>>>>>>>>......... ...........<<<<<<.<<<<<<<............>>>>>>>.<<<<< <.<<<<.<<<<<<<<<<<.<<<<<.<<<<<<<...........>.>>>>> >.>>>>>.>.>>>>>>>.>>>...>>>>..>>>>.>>..<<<<<<<<<<. ....>>>>>>>>.>>....>>>>>>.....>>>.>>>>>...>>>>>... >>>>>>>>..<<<<........>>>><<<<<<....<<<<<<<<<<<<<. .<<<...<<<<........>>>>.....>>>...<<....>>...<<<<< <<......>>>>>>>..<<<<<...<<<..<<<..((((.((((>>>..> >>....>>>>>.<<<<<<<<<.<<<<......>>>>>>>>>>>.>>.... >>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<... .<<<<<<<....>>>>>>>.....>>>...<<<..<<.<<........>> >>.>>>....>>>>>>>>>...<<.......>>......>>>>>>...>. .>.>>..<<<<<<....<.<<<....>>>.><<.<<<<<<<......... ...........<<<.<<<<<<<<<...<<<....<<<..<.<<<..<.<< .............>>.>>>>.>..>>>..>.>>...>>>>>>>...<<<< <<<<<.........>>>>>>>>>....>>>>>>>>>>>>..>>..<<<<. <<<<<.....>>>>>.>>>>....<<<......>>>...<<<<<<<...< <<(((.......<<<<<.....<<..........<<<.<<<<<<<<<<.. .....<<<<<.<<<...<<.........>>...>>>.........<<... ...>>...>>>>>...>>>>>>>>>>>>>..........))).>>...>> >>>..>>>...>>>>>>><<<<<<.<<<..........)))).))))... <.....>..................>>>>>>>>>....>>>>>>.<.<<< <<<<<.<<......<<<<.<<<<....>>>>>>>>...>>>>>>>>>>.. >.....>>>>>><<.....<<.....<<<<<<.......>>>>>>.<<<. ....<<<<<.<<...<<<<<<...<<.....>>.>>>>>>....((<<<< <<...<<....<<<....>>>..........<<.<<<<<...<....>.. >>>>>>>......>>....>>>..<<<<<........>>>>>))<<<<.. ..<<<<<..<<<<<<<<....>>>>>>>>..<<<....>>>...<..<<< <<<<...<<<<<<<<<<<<.<<<<<<<<<<..[[[..>>>>>>....<<< <<.<<<<.<<<<.....<<<.....>>>.....>>>>>>>>..>>>>>.. ...<<<<<<<.......>>>>>>>>>>>...>>>>>>>>>>>>....... ..>>>>>>>..>..........>>.>>>.>>>>.>>>..>>.....<<.. ....>>>>>>>.<<<<.....>>>>..>>>....<<<<.....<<<<<<< .<<...............<<<<<....<<..>>.....>>>>><<.<<<< <<<<<<<..<<..........>>.......>>>>>..>>>>>>.>>.... ........<<<<<<<<<..<<<.........>>>..<<<<<<<....<<< <.....>>>>......>>>>>>>...<<..<<<..<<<<<<.....<<.. ...<<<<....>>>>.....>>..>>>>..>>>>><<<<<<.......>> >>>>........<...........<<<<<.......>>>>>.....>... ..>>....>>.>>>>>>>.....>>.>>>>>>>..>>>>>>....>>... .<<<<<........>>>>>....<<<<<..<<<.<<......<<<<.<<< <<<..<<<<<.<<<<<<<<<.<<<<<<<<<<<<..<.............. ...................<........................>..... ........................................>...>>.>>> >>>>>>>...<<<<<.....<<<<.....<..............>..... ...........<<<<<<<<<<.......>>>>>>>>>>..>>>>..>>>> >....>>>>>>>>>..>>>>>...<<<.....>>>..<<<<<<....... ....>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.... .<<.[.(((>>....>>>>>>>...<<<..<<<<.......>>>>..>>> <<<<....>>>>>>)))].....<<<<<<<..<<<..)))))).>>>>>> >>>>.........>>>>..>>>>>>.......<<.<.<.<<<<<<...<< .......>>...>>>>>>...>>.>.>.......<<<<<.<<<<<<..<. <.<<<<<......>>>>>...>.>.<<<.........>>>.....>>>>> ..>...>>>.>>....<<<<<<<....>>>.>>>>....>>..>>>.>>> >>.....<<<<<<.<..<<<..<.<<<<<.................>>>> >.><<<<....<<<<....<<.<<<<<<<]]].>>>>>..>>.>>...>> >>...>>>><<<<<...<<<<<...........>>>>>...>>>>>.>>> ...>.>>>>>>.....<<<<<<<.<<..<<<<....<<<........<<< <<.<<<<....>>>>.>>>>>.......>>>...<<<..<<<<....<<< <.<<<<<<<......>>>>>>>>>>>...>>>>..>>>............ ..>>>>..>>>>>>>>><<<<<.<.............>....<<.<<<<< <<.<<.....<<<<.<..<<<<<......>>>>>..>>>>>....>>... .>>>>.>>>.>>..>>>>>.. |
|
|
|
|