Structure of PDB 6zj3 Chain Lh Binding Site BS01

Receptor Information

>6zj3 Chain Lh (length=158) Species: 3039 (Euglena gracilis)

PHSWGKKARTRDLFSKGFRCHGRPSLSTYLAVFKIGDYVDVVTDPSVQKG
QPSKVFQGKTGTVWNVTPRAVGVLVNKRVRGRIVRKKISVRTEHVRKSRC
QQDFKERVRHNELVKRTGVGKKIKRQPVGPREGQLLKLRKKPIPLGAKKF
VFSEVYNF

Ligand information

>6zj3 Chain LE (length=652)

ucgcuggugguugggcuggggggugugcggcugcaccgggggcugcaccg
uacggugguccccuugcuggcugcaccgucccccagccugaccccaguga
gaaauuggcagcagagcuuggcacgcagugcugcucucugcccgucucga
aacacggaccaaggagucuaaggagcuugccagucggauggcuuccaaaa
ccuugaggcguggugaaggcaacuauccuuccagauggggcuagucucug
cauggaacgaccggacccgaaguccaguggacaggguuucgagugcuugc
aagguccuugggacccgaaagguggugaacuauaccguucuacggugaag
ccaugggaaacugugguggaagccggucgcuguucugacgugcaaauugu
guagccugagugcggcauaggggugaaaggccaaucgagccaccuaguag
cugguucccuucgaaguuucccucaggauagcugggauccaaugaugcaa
agugugacugguugcauccgguaaagcaacgcaugagaggcuggggagcu
ccucaaccuauccucgaacugugaaugggugcggacaggcaugcuucuuu
gccacgacaggaggcuguguaacagcaguucuccccgucuucugagcaug
uu

<<<<<<<.<<<<<<<<<<<<<<<<<<<<<<<<<....<<<<<...<<<<<
..>>>>>.>>>>>....>>>>>>>>>.>>>>>>>>>>>>>>>>>>>>>>>
..........<<.............................<<<<.....
...>>>>.........<<<<<<<<.<<<<<..<<<....<<.........
>>....>>>...<<....>>........<<<<<...<<<<....>>>>..
..>>>>>..<<<<<<<<<...<<<<...>>>>.>>>>.>>>.>>....>>
>>>.>>>>>>>>.<<.<..<<<<<<<.....<<.<<<<.<..<<<....<
<<<<<<....>>>>>>>.....>>>...<<<.....<<........>>..
..>>>....>.>>>>.>>...<<<.....>>>......>>>>>>...>..
>.>>............<.<<<....>>>.>................>>..
.............<<<<<<<...<<<...<<.<.<<.<<<.<<<<<<..>
>>>>>.>>>.>>.>>>..>>.>...>>>>>>>.....<<<<<<<<.<...
.....<<<.<<<<.<<<<......>>>>..>>>>..>>>....>>>>>>>
>>

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6zj3 Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.
• Resolution: 3.15 Å
• Binding residue (original residue number in PDB): R12 D13 L14 F19 K35 Y39 D41 Q58 G59 K60 T61 N77 R97 R100 C101 Q102 D104 F105 R108 V109 N112 E113 R126 L136 K138 L139 R140
• Binding residue (residue number reindexed from 1): R11 D12 L13 F18 K34 Y38 D40 Q57 G58 K59 T60 N76 R96 R99 C100 Q101 D103 F104 R107 V108 N111 E112 R125 L135 K137 L138 R139

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sun Apr 6 22:25:57 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zj3', asym_id = 'Lh', bs = 'BS01', title = 'Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zj3', asym_id='Lh', bs='BS01', title='Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6zj3', asym_id = 'Lh'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6zj3', asym_id='Lh')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>