Structure of PDB 6zj3 Chain Lf Binding Site BS01

Receptor Information
>6zj3 Chain Lf (length=170) Species: 3039 (Euglena gracilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AGLKLQGRLAAALLKCGRNRVWLDPNETSDIAMANSRANVRKLIKDGFII
RKPVAVQSRARWRKLRAAKLKGRHTGPGKRRGTANARMPTKVLWIQRQRV
LRRMLMRYRDAKKIDKHLYRELYMKCKGNVFKNKRLLMEHIHKAKAAKQK
EKLIKDQLDAKKQKSLAKRE
Ligand information
>6zj3 Chain S1 (length=2024) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaucugguugauccugccagcagucauaugcuuuguucaagggcuaagcc
augcacgucucagcgcaaacggagugacaguggaucugugaauggcuccu
uacaucagcagucaucuacgugauagagugugcucgguccaccugcaagg
accccauuggacauccaccaaaaccuuguggcuaauacacguucgaccca
gucagccaugcaacacucggcaucaccggugguggcggauguaugcccag
cugauacgaagaccagcggccgcaaggccaguguugguugacucaggcug
gcccuggccgcagugcugguggauuucgugcaugcgcaugccccacuuga
ucgcaagagcuucugaccuaucagcuugacugugguguaucggaccacag
uggccuugacggguaacggagaaucaggguucgauuccggagagggagcc
ugagagacggcuaccacuaccaaggugggcagcaggcacgcaaauugccc
caugcaaagacagucugugaggcagcgacgaacaguagcaaccccgucgg
ccuugccgauggggcuuggaauggacgcuauccaaagacagccgugagua
ucaaccggagggcaagucuggugccagcagcugcgguaauuccagcuccg
agggcguauacuaacauugcugcuguuaaaacacuuguagucugccuacg
ggcugcaggucugcuggguggccgguuuguuguuucucuggccagcugug
uugggcugcaacggcugguacgucccugcgcccaccgauggugaggcucc
ugccaaaagucugccaaagcgguuuaugccucccgcacuggcaacggaca
ccaacaggggacccagcagcuggguucugguccaccaccggagcccaccg
ucugacacccuggaaaacucagugugcucaaagcauccccgcgacggcug
aauguccauccauggaaugucaaggcaucgaccaaguguggcauuggagu
ugugcuggccuuggggcccacucuggacaaccugguggugugcacccauc
gaucguaagugaugggacuguucggggugaaagauacgggagcgccagag
gugaaauucuuagaucgcugccagauccacugcagcgaaggcguucugca
agugcacguccgucgaucaagaaugagaguucggggagcaaagaugauca
gacaccgucguaguccggccacuguaaacgaugccggccaggccuuggca
gagcaagaauccuagacucugucagggccaacgagaaauccacagccugu
ggguucaggggggaguacugucgcaaggcugaaacuuaaaggaauugacg
gaauggcaccacaaggcguggaguaugcggcuuaauuugacucaacgcgg
ggaauguuaccaggucaggacgcaacugggauugacagauugagagcucu
uucuugaucuuguggacgguggugcauggccgcuccugauugguggagug
auuugucugguugauuccgauaacgagugagacaucugccucccacuagc
cugaggcucgcuagggggcugcugcaugcucccgagagccuccaguucag
cuucucugaggugcuguguccgccacaaagggcaugcaugcuagagccaa
cagcaggucugugaugcucccagauguccugggccgcacgcgcacuacau
ugucacagugaaggugucgacaugcccacgugggcccuggccugaagagg
cugggaaauccugcaagccugugacguacuggggauagaugguugcaacu
gucugccuugaacguggaaugccuaguaugccugggucaucagcccagac
cgauugugucccugccauuuguacacaccgcccgucguugcuaccgaugg
uggcuggauagagucaucaggagguuguggagggcaucccagccgaaauu
ggacgauguccagccacuagaggaagcaaaagucguaacaagguugcugu
aggugaaccugcagcaggaucauu
...<<<<<...[[[[>>>>>.<<<.<<<<<<..<<<<<..<......<<<
.<<<..<<....<.....<<.........>>....>.>>......<<..<
....<<<<.<<<..<<<..<<<<<.......((..<<<<.....))...>
>>>....<<.....<<<<.<.....>.>>>>......>>...........
<<<.<<<<<....<<<.<<.......>>>>>>>>>>.>>>..<<..<<<<
<<......[[[.(((((<<<<....>>>>................>>>>>
><<..>>.....>>....<<<<.......<<<<<..>>>>>.>>>>...>
>>>>.>>>>>>.>>>><<<....<<<..<<<<<<<<.......>>>>>>>
>>>>......>>>...<<<<<<<<....>>>>...>>>>>>>.<<.<<<.
.........>>>.>>.<<<<<..>>>>>...>>>>>>.........<<<.
...<<<.........>>>..>>>..>...>>>>>....<<<.<<<<<<<<
<...>>>>>>>.>>.>>>......<<<<............>>.>>.....
.....<<<<((....<.<<<<.....<<..))>>.......>>>>>>>>>
...>>>>>>>>>..........<<<{{.....<.<<...<<<.<.....<
<<<.<<<<<.<<.........<<<...<<<<<<..<.<..<<<<..>>.>
>.>.>..>>>>>>..>>>.>.>..>>>>>>>>>...<<<<<<<..<<<<<
.<<.....<.....>.....>.>.......<<.......>>....<<<<.
.....<<<...<<..<<.>>.>>..>>>.>>>>......>>>>>.>>>>>
>>.<<<<<<.<<<<.....<<..<<.......>>..<<.......>>...
..>>....>>>>.>>..>>>>.......<<.<<<<<<<.<<<........
...))))).]]]...>>>>>>>.>>>......<<<<<<.<<..>>>>>>>
>..>>....>....<<<.<<<.<...<<<.<<<<..<<<.<<<<...<<<
......>>>......>>>>.>>.>.>>.......<<....>>.>>.>>>.
.>.>>>..>>>...>>>...>>.>...<<<<<<<...<<...<<<<.<..
...>.>>>>...>>>>>>..>>>.........<<<.<<..<<<<<<<<<<
<<<..<......>...>>>>>>>>>>>>>...<<..}}>>....>>....
.>>>.>>>.<<<.......<<<....>>>.....>>>..]]]]..<<<<<
.<<<<<<<..<<.<<<<<<..<<<.<<<<<<......<<........>>.
.........<<<<<.<....<<<<<.....<..<<.<<<........>>>
.>>.>....>>>>>...<<.<<<..<<.<<<<<<....<<<.<<<<<...
.>>>...<<<......>>>...>>.>>>......<<<<<<<<.....<<<
<<<<<<<<<....<<<<<<<<<.>>>.>>>>>>..>>>>>>.>>>....>
>>.....>>>>>...<<<<<<........>>>>>>.......>>>.....
.>>>.>>>.....>>>>>>>.....>.>>>>>...>>.>>>>.>>>....
.<<<<<<<.......<.......<<<<<..>>>>><<<<<<<<....>>>
>>>>>....>........>>>>>>>...........<<.<<<........
..>>>.>>..........>>>>>>.....<.<<<<<.......>>>>>.>
.......>>...>>>>>>>>>>.>>....<..<<.<.<<<<<.<<...<<
<<<<<<<<<<..<<<.......<<<<<.<<<.....>>>>>>>>......
.>>>..>>>>>>>>>>>>...>>.>>>>>..>.>>...>.....<<<<<<
<<<<..>>>>>>>>>>........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zj3 Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.
Resolution3.15 Å
Binding residue
(original residue number in PDB)		K166 A169 K170
Binding residue
(residue number reindexed from 1)		K164 A167 K168
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Apr 6 22:35:37 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zj3', asym_id = 'Lf', bs = 'BS01', title = 'Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zj3', asym_id='Lf', bs='BS01', title='Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0022625', uniprot = '', pdbid = '6zj3', asym_id = 'Lf'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0022625', uniprot='', pdbid='6zj3', asym_id='Lf')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>