Structure of PDB 6zj3 Chain LY Binding Site BS01

Receptor Information
>6zj3 Chain LY (length=134) Species: 3039 (Euglena gracilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKGTGNKFRISLALPVAAVMNCADNTGAKNLYIISVKGIKGRLNKLPAAC
VGDMVLATVKKGKPELRKKVMPAIVVRQRKHWRRKDGTFIYFEDNAGVIC
NPKGEMKGSGVTGPVAKEAADIWPRVASNAGTVV
Ligand information
>6zj3 Chain LH (length=559) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaguggcagucacugguuccaaugaacagccugaaggauuccccuugugu
ccguacugcaucaccgcagccggucuccucgacuagacgucgcuugucca
cggacgaaaugcagcuaagggaagucggcaaacuggccgugcaccuuugg
aagauacgguggcuccagaggccauggcucguguggaacuguugcugugc
aggggaaucugacuguuuaauugaaacccagcuuugugaagggaccagcu
ggcugguuccgugaggugacuucugcccagugcucugauugucaaugcga
agagauucagccaagcgcggguaaacggcgggaguaacuaugacucucuu
aagguagccaaaugccucgucaaccaauuauugacgcgcaugaauggauc
aacgagauuccugcugucccuagucgcugucuggugaaccaacaaccaag
ggaacgggcuuggaugugucagcggggaaagaagacccuguugaguuuga
cucuaguuugauacugugcaacaacauguggggcguagcauaggugggag
gugagugcc
..................................................
.............<<......>>......<<<<.....>>>>........
<<<<......<<.<<<<.<<.........<.....<<<<<<.........
....>>>>>><<.<<<<..<<<<..>>>>....>>>>.>>..........
..<<<<<<<<<...<<.........>>...<<<<<<<....<<.<.....
>.>>......>>>>>>>...<<..<<<..<<<<<<....<<<....<<<<
<....>>>.>>...>>>.>>>>..>>>>><<<<<<.......>>>>>>..
......<...........<<<<<.......>>>>>.....>.....>>..
..>>.>>>>>>>..>..>>.>>>>.>>..>>>>............<<<<<
........>>>>>.....................................
..................................................
.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zj3 Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.
Resolution3.15 Å
Binding residue
(original residue number in PDB)		A19 P21 A23 A24 V25 I40 R48 N50 K51 L52 T64 K66 K74 V76 R85 K86 N101
Binding residue
(residue number reindexed from 1)		A13 P15 A17 A18 V19 I34 R42 N44 K45 L46 T58 K60 K68 V70 R79 K80 N95
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Nov 26 10:30:02 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zj3', asym_id = 'LY', bs = 'BS01', title = 'Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zj3', asym_id='LY', bs='BS01', title='Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6zj3', asym_id = 'LY'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6zj3', asym_id='LY')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>