Structure of PDB 6rm3 Chain LV0 Binding Site BS01

Receptor Information

>6rm3 Chain LV0 (length=135) Species: 6039 (Vairimorpha necatrix)

KKVARKPHRRMTKGCQMETLLKCADNSGAKLLKVIGVRGYKGRLNRYPAA
APGDIVVVSCKKGKPDLRKKVHYAILVRQKKVWRREDGTHIGFEDNAAVL
ITAKGDMRGGQISGSLPKEVAECWPKISNSGNSIN

Ligand information

>6rm3 Chain L50 (length=2313)

uacccacacaugggaucaauaggauaccauaacgaugaaggucguaauag
aauacgaaaguauuuaccuaauuaauauauuaauguauugauaacccuuu
gaacuuaagcauaucauuaaaaggaggaaaagaaacuaacuaggauuucu
uuaguagcagcgagugaacaagaaauaacccuccauuguaauccuuaauu
ggaguuguaaaugguuuauucuauuaauuauuauagagaauauauucguu
auuaauagaauagaauaauguacuugaguagagcugcuugguagugcagu
uugaauaaagguagaaugaaauaucuaagguuaaauauaaugguauaccg
auagaaaauaaguacugcgaaggaacuugugaaaauguguggaguuuagc
cuuauuuuuaaggacccgucuugaaacacggaccaaggagauuauaauua
uagcaagauaaaaauaaucuuuauuaacuugauuaguuauaauuauaaga
cccgaaacacagugaacuauacauguucugguugaagauaagcaaguuua
uuggaagaccauaaucauucugacgugcaaaucgaugauuuaagaugugu
auaguggcgaaagaccaaucgaacugugugguagcugguucacagcgaaa
ugucucucaggacagcaguuauuauuauauaggacauagauguaggacac
uguuauaguuaacuaugagaaaucuuuaauucuauggaauuauauaaauu
aaauuuauauaaugaaucuauuguauaacuagugggcacaugauuguaag
aaugaugugcaaaaagggaugaaccuuaugaaacauuaaauauucuaaau
aguagauauuauaccauaaauaugaugaauacauguauuauuguauaaaa
uggaagaagauuacuacuuuuaugagauguuucuaauauuuagguagcug
ugcaauuuguuuguauugaaguauauaugugaguauauauagaagaaaca
aaugagccgaucuuggaggcaguaacaauauauguauagauauagacuag
gguuuucaauuuauugaagugaaucgguguuauauaaaaacaaaaaagau
uaauaauucuuuauuaaauuauuauaagguaacuugauaaugacaguaua
uuucaauaaauuuaagauaaaugaauuaaauuuuuaacuauggauuguca
ugauaagaaauaguuaauuauauauacuugauaaaaauaaaauaauuuua
accguaccuauaccgcaucaggugucuuuguaucauaacaaauauuuuaa
auuaaaguaaguaagggaauucggcaaauuagaucuguaacuuugggaua
aagauuggcucuagcaugcuagaacuuuuacuauguaaggaaucugacug
uuuauuaaaaacauagcuuuuuguauuuacaagaagugaauucugcccag
ugcauuuguuaaaguuguguaagcgaauguaaacggcgggaguacuauga
cucucuuaagguagccaaaugccucgucauuuaauuggugacgcgcauga
auggagcaacgagauuccuacugucccuacuuacaauuuugugaaaccac
gagacaagggaacgggcuuguuauuuaucagcggggaaagaagacccugu
ugagcuugacuuuaguauguuuuaauaaauauucgaauauuuauuuauua
gaauauauggggaguuuggcuggggcgguacagcuguuaaaaaguaacac
agcuguccuaagguagaugaaugauggaugguaaccaucaguuuauuaua
agggaauaaaucugcuuuacuuuaugcauaugacuguauuuaguagggaa
accuuggccuagcgaucccaauuacauucauuauguauugggugauugaa
aaguuaccacagggauaacuggcuuguagcaggcaagcgaucauagcgac
ucugcuuuuugauucuucgaugucgucucuucugaucaucguaguguaua
uguuacgaaguguuggauuguucacccgguaaugaggaacgugagauggg
uuuagaccgucgugagacagguuaguuuuacccuacuguaaguauuuuug
agugaacuuugauaguacgagaggaacucuaagugaugaccacugguagu
gcgauuaacuauuaaguuauguugcuuagcuacgucguuucgauuaaggc
ugaaagccucuuaagccugaagcguagcucaaagauacauuuaggagaau
acuacucuuuuaagcagaacuguaagaaugaagguguaugccgacauuuu
gagguuacugcuu

.<<<<<<<<<<.....<<<..<<<<<<<<<..<.....<<<<<<<.....
...>>>.........>>>>....<<<<<<<..>>>>>>>>....<<<<<<
.....<......>......>>>>>.>.........<<....>>.<<<<<<
<.....<<.....>>....>>>>>>>.<<<...........<<<......
>>>...........<<<<<<<<<<<<<<.........<<<<..>>>>...
>>>>>>>>>>>>>>................<<<<<<<........>>>>>
>>......<<<<<.(((((..>>>>>..>>>........>>>>>>>.>>.
..............<<....>>....>>>.....>>>>>>>>.>>....<
<<<<....>>>>>..<<<<........>>>>.<<<<<....<<<<<<<<<
<<<<..<<<.......>>>...<......>.....>>>>>>>>>>>>>..
<<.<..<<<<<<<.....<<<<<<<<<.<<<<....<<<<<<<..>>>>>
>>.....>>>>.<<<<..<<.<<........>>>>.>>>>...>>>>>>>
>>...<<.......>>......>>>>>>...>..>.>>..<<<<<<....
<<<<<....>>>>><<<<<<<<<.....<<<.<<<<<<<<...<<<<...
<..<<<<<<..>>>>>>..>..>>.>>...>>>>>>..<<<<<<<<.<..
....>>>>>>>>>...>>>>>.>.>>>>>>.>>..<<<<<<.<<<.....
>>>.>>>>>>...<<<<......>>>>..<<<<<<<...<<<(((.....
.<<<<..............<<<<<<<.<<<<<<>>>>>>>>>>>>>....
.....))).....>>>>...>>>...>>>>>>><<.....>>....>>>>
>><.<<<<<<<<........<<<<<<<<....>>>>>>>>.....>>>>>
>>>..>.....>>>>>.<<.....<<<<<<<....>>><<<<.<<<<..<
<...<<<<<<..>>>>>>....((<<<<<<.........>>...<<<<<.
.......>>>>>))<<<<<<<<...<<<....>>>.........<<<<<<
<......<<<<<<<<....[[[...>>>>>>>><<<<<<<<...<<....
.>>......>>>>>>>>....>>>>>>>.............>>>>>>.>>
>>>>..>>....<<......>>.>>>><<<........>>>.>>>>..<<
......<<<<<<<.<<.........<.....<<<<<....<<..>>....
.>>>>><<.<<<<<....>>>>>.>>...........<<<<<<<<<..<<
<.........>>>..<<<<<<<........>>>>>>>...<<..<<<..<
<<<<<<.<<<...........>>>.>>>>>..>>>>><<<<<<......>
>>>>>........<...........<<<<<<.....>>>>>>.....>..
...>>....>>.>>>>>>>..>..>>.>>>>>>>..>>>>>>....>>..
..<<<<<<........>>>>>>......<<<..<<<.<<......<<<<.
<<<<<<..<<<<..<<<<<<<..<<<<<<<<<<..>>>>>>>>>>.....
.>>>>>>>...>>>>...<<<.....>>>..<<<<<<...........>>
>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....<<.[.
(((>>....>>>>>>>...<<..<<<<<......>>>>>..>>.<<<...
.>>>.>>)))].....<<<<<<.<<<.))))).>>>>>>>>>........
.>>>>..>>>>>>.......<<.<.<.<<<<<<...<<.......>>...
>>>>>>...>>..>>.......<<<<<.<<<<<...<<<<<<<<<.....
.>>>>>>>..>>.<<<.........>>>......>>>>..>...>>>.>>
....<<<<<<<....>>>.>>>>....>>..>>>.>>>...<<<<<<<<<
<<<..<<<<.<<...............>>.>>>>.<<<<<....<<<...
<<<<<<<<<.]]]..>>>>.>>>>>...>>>..>>>>>..<<.<..<<<<
<............>>>>>...>>>..>>>>>>>>>>>>.....<<<<...
....>>>>....<<<<<<<<<....<<<<<..<<<....>>>..>>>>>.
..>>>>.>>>>>.

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6rm3 Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome.
• Resolution: 3.4 Å
• Binding residue (original residue number in PDB): H19 R21 Q27 E29 I46 R49 K52 G53 R54 L55 N56 R57 Y58 K80 K92
• Binding residue (residue number reindexed from 1): H8 R10 Q16 E18 I35 R38 K41 G42 R43 L44 N45 R46 Y47 K69 K81

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed Dec 4 06:29:25 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6rm3', asym_id = 'LV0', bs = 'BS01', title = 'Evolutionary compaction and adaptation visualize...structure of the dormant microsporidian ribosome.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6rm3', asym_id='LV0', bs='BS01', title='Evolutionary compaction and adaptation visualize...structure of the dormant microsporidian ribosome.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6rm3', asym_id = 'LV0'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6rm3', asym_id='LV0')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>