Structure of PDB 6rm3 Chain LR0 Binding Site BS01

Receptor Information
>6rm3 Chain LR0 (length=165) Species: 6039 (Vairimorpha necatrix) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NKSEKARSMAAKVLNCGKNKIWLDPSGKEQINQVSTREQIRQLIDDNVII
KKLDKYNSKGRSRIYKEAVAKGRHMGLGKRLGTANARLNKKTLWIKKIRV
MRKELKDMKAEGKINAEEYQLFRKRAKGNLFKNRVTMKEHIAKKQAAELR
IKELEEQAKALKMKK
Ligand information
>6rm3 Chain L50 (length=2313) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uacccacacaugggaucaauaggauaccauaacgaugaaggucguaauag
aauacgaaaguauuuaccuaauuaauauauuaauguauugauaacccuuu
gaacuuaagcauaucauuaaaaggaggaaaagaaacuaacuaggauuucu
uuaguagcagcgagugaacaagaaauaacccuccauuguaauccuuaauu
ggaguuguaaaugguuuauucuauuaauuauuauagagaauauauucguu
auuaauagaauagaauaauguacuugaguagagcugcuugguagugcagu
uugaauaaagguagaaugaaauaucuaagguuaaauauaaugguauaccg
auagaaaauaaguacugcgaaggaacuugugaaaauguguggaguuuagc
cuuauuuuuaaggacccgucuugaaacacggaccaaggagauuauaauua
uagcaagauaaaaauaaucuuuauuaacuugauuaguuauaauuauaaga
cccgaaacacagugaacuauacauguucugguugaagauaagcaaguuua
uuggaagaccauaaucauucugacgugcaaaucgaugauuuaagaugugu
auaguggcgaaagaccaaucgaacugugugguagcugguucacagcgaaa
ugucucucaggacagcaguuauuauuauauaggacauagauguaggacac
uguuauaguuaacuaugagaaaucuuuaauucuauggaauuauauaaauu
aaauuuauauaaugaaucuauuguauaacuagugggcacaugauuguaag
aaugaugugcaaaaagggaugaaccuuaugaaacauuaaauauucuaaau
aguagauauuauaccauaaauaugaugaauacauguauuauuguauaaaa
uggaagaagauuacuacuuuuaugagauguuucuaauauuuagguagcug
ugcaauuuguuuguauugaaguauauaugugaguauauauagaagaaaca
aaugagccgaucuuggaggcaguaacaauauauguauagauauagacuag
gguuuucaauuuauugaagugaaucgguguuauauaaaaacaaaaaagau
uaauaauucuuuauuaaauuauuauaagguaacuugauaaugacaguaua
uuucaauaaauuuaagauaaaugaauuaaauuuuuaacuauggauuguca
ugauaagaaauaguuaauuauauauacuugauaaaaauaaaauaauuuua
accguaccuauaccgcaucaggugucuuuguaucauaacaaauauuuuaa
auuaaaguaaguaagggaauucggcaaauuagaucuguaacuuugggaua
aagauuggcucuagcaugcuagaacuuuuacuauguaaggaaucugacug
uuuauuaaaaacauagcuuuuuguauuuacaagaagugaauucugcccag
ugcauuuguuaaaguuguguaagcgaauguaaacggcgggaguacuauga
cucucuuaagguagccaaaugccucgucauuuaauuggugacgcgcauga
auggagcaacgagauuccuacugucccuacuuacaauuuugugaaaccac
gagacaagggaacgggcuuguuauuuaucagcggggaaagaagacccugu
ugagcuugacuuuaguauguuuuaauaaauauucgaauauuuauuuauua
gaauauauggggaguuuggcuggggcgguacagcuguuaaaaaguaacac
agcuguccuaagguagaugaaugauggaugguaaccaucaguuuauuaua
agggaauaaaucugcuuuacuuuaugcauaugacuguauuuaguagggaa
accuuggccuagcgaucccaauuacauucauuauguauugggugauugaa
aaguuaccacagggauaacuggcuuguagcaggcaagcgaucauagcgac
ucugcuuuuugauucuucgaugucgucucuucugaucaucguaguguaua
uguuacgaaguguuggauuguucacccgguaaugaggaacgugagauggg
uuuagaccgucgugagacagguuaguuuuacccuacuguaaguauuuuug
agugaacuuugauaguacgagaggaacucuaagugaugaccacugguagu
gcgauuaacuauuaaguuauguugcuuagcuacgucguuucgauuaaggc
ugaaagccucuuaagccugaagcguagcucaaagauacauuuaggagaau
acuacucuuuuaagcagaacuguaagaaugaagguguaugccgacauuuu
gagguuacugcuu
.<<<<<<<<<<.....<<<..<<<<<<<<<..<.....<<<<<<<.....
...>>>.........>>>>....<<<<<<<..>>>>>>>>....<<<<<<
.....<......>......>>>>>.>.........<<....>>.<<<<<<
<.....<<.....>>....>>>>>>>.<<<...........<<<......
>>>...........<<<<<<<<<<<<<<.........<<<<..>>>>...
>>>>>>>>>>>>>>................<<<<<<<........>>>>>
>>......<<<<<.(((((..>>>>>..>>>........>>>>>>>.>>.
..............<<....>>....>>>.....>>>>>>>>.>>....<
<<<<....>>>>>..<<<<........>>>>.<<<<<....<<<<<<<<<
<<<<..<<<.......>>>...<......>.....>>>>>>>>>>>>>..
<<.<..<<<<<<<.....<<<<<<<<<.<<<<....<<<<<<<..>>>>>
>>.....>>>>.<<<<..<<.<<........>>>>.>>>>...>>>>>>>
>>...<<.......>>......>>>>>>...>..>.>>..<<<<<<....
<<<<<....>>>>><<<<<<<<<.....<<<.<<<<<<<<...<<<<...
<..<<<<<<..>>>>>>..>..>>.>>...>>>>>>..<<<<<<<<.<..
....>>>>>>>>>...>>>>>.>.>>>>>>.>>..<<<<<<.<<<.....
>>>.>>>>>>...<<<<......>>>>..<<<<<<<...<<<(((.....
.<<<<..............<<<<<<<.<<<<<<>>>>>>>>>>>>>....
.....))).....>>>>...>>>...>>>>>>><<.....>>....>>>>
>><.<<<<<<<<........<<<<<<<<....>>>>>>>>.....>>>>>
>>>..>.....>>>>>.<<.....<<<<<<<....>>><<<<.<<<<..<
<...<<<<<<..>>>>>>....((<<<<<<.........>>...<<<<<.
.......>>>>>))<<<<<<<<...<<<....>>>.........<<<<<<
<......<<<<<<<<....[[[...>>>>>>>><<<<<<<<...<<....
.>>......>>>>>>>>....>>>>>>>.............>>>>>>.>>
>>>>..>>....<<......>>.>>>><<<........>>>.>>>>..<<
......<<<<<<<.<<.........<.....<<<<<....<<..>>....
.>>>>><<.<<<<<....>>>>>.>>...........<<<<<<<<<..<<
<.........>>>..<<<<<<<........>>>>>>>...<<..<<<..<
<<<<<<.<<<...........>>>.>>>>>..>>>>><<<<<<......>
>>>>>........<...........<<<<<<.....>>>>>>.....>..
...>>....>>.>>>>>>>..>..>>.>>>>>>>..>>>>>>....>>..
..<<<<<<........>>>>>>......<<<..<<<.<<......<<<<.
<<<<<<..<<<<..<<<<<<<..<<<<<<<<<<..>>>>>>>>>>.....
.>>>>>>>...>>>>...<<<.....>>>..<<<<<<...........>>
>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....<<.[.
(((>>....>>>>>>>...<<..<<<<<......>>>>>..>>.<<<...
.>>>.>>)))].....<<<<<<.<<<.))))).>>>>>>>>>........
.>>>>..>>>>>>.......<<.<.<.<<<<<<...<<.......>>...
>>>>>>...>>..>>.......<<<<<.<<<<<...<<<<<<<<<.....
.>>>>>>>..>>.<<<.........>>>......>>>>..>...>>>.>>
....<<<<<<<....>>>.>>>>....>>..>>>.>>>...<<<<<<<<<
<<<..<<<<.<<...............>>.>>>>.<<<<<....<<<...
<<<<<<<<<.]]]..>>>>.>>>>>...>>>..>>>>>..<<.<..<<<<
<............>>>>>...>>>..>>>>>>>>>>>>.....<<<<...
....>>>>....<<<<<<<<<....<<<<<..<<<....>>>..>>>>>.
..>>>>.>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6rm3 Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		N8 K9 K12 R14 K25 N26 W29 L30 K35 N39 R44 R48 K62 N64 S65 K66 R68 S69 R70 R80 H81 M82 G85 L88 G89 R94 K98 L100 W101 R106 R109 R130 K131 R132 K134 N136 N140
Binding residue
(residue number reindexed from 1)		N1 K2 K5 R7 K18 N19 W22 L23 K28 N32 R37 R41 K55 N57 S58 K59 R61 S62 R63 R73 H74 M75 G78 L81 G82 R87 K91 L93 W94 R99 R102 R123 K124 R125 K127 N129 N133
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 04:50:48 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6rm3', asym_id = 'LR0', bs = 'BS01', title = 'Evolutionary compaction and adaptation visualize...structure of the dormant microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6rm3', asym_id='LR0', bs='BS01', title='Evolutionary compaction and adaptation visualize...structure of the dormant microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0022625', uniprot = '', pdbid = '6rm3', asym_id = 'LR0'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0022625', uniprot='', pdbid='6rm3', asym_id='LR0')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>