Structure of PDB 6zu5 Chain LPP Binding Site BS01

Receptor Information
>6zu5 Chain LPP (length=81) Species: 235221 (Paranosema locustae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SRGTKKVGIVGKYGVRYGSSLRKRIKAIEISQHAKYECKACGKTSVKREV
VGIWKCKACAFTFAGGAFAPTTSAGAHSNSI
Ligand information
>6zu5 Chain L50 (length=2455) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caccccggugggggaucccucggccugcgcgccgggcaaggacgcggacg
cacgcgauagacggcacgauccucagacacgacugccggucuccgacagc
ggcgcagccgcagacaaccccccggacuuaagcauaucacuagggggcgg
agaagaaaccaacagggauuccugcaguagcggcgagcgaacagggacga
gcccgcauggcaaucggcaucgccgaguugugacagcgcaccgcgaacgc
cccggacagggcggccacagagggcgacagccccguagcagcgcgcagcg
gagcgaguagcgcugcuuggucaugcagcgcgaagcggugguggcgccau
cgaaggcuaaauacgccgcaggaccgauagcgcacaaguaccgcgagggg
acggcgacgagcagcccgcaggggcggcgaaagcgugaaaccaccggggc
gcccacuugugggccccgucuugaaacacggaccaaggagugcaugugcg
cagcgaguccgcuccgcggcgcagcgaaggccaucgagcugcgcacaugc
gacccgauaggcagugaacuacgccugggcagggcgaagcccgcggaaac
gcagguggaggccccgagccguucugacgugcaauucgauggcgcgaccu
gggcguagcggcgaaagaccaaucgaacugccugguagcugguucccucc
gaaaugucccgcaggacagcgggcgccccgcaggucugccgcguagagca
auggcgcggcguccggcgccggcgcacccccaaacugcgaagcggcaggg
cgcgcgcagcagcgugcgcgcgcacaacugcgggcgccuagugggccgcc
gcugguaagcagcgccggcaaugaggacacaaccucgugcgcgggcaagg
gaccccagcugcgcacacagacgaagggcgcgggcgcgcccgccccgaaa
auggacggugcucagcgcagccccgaccccgcgcacgcacagcgugguag
gagggcgcgccggcgccgcagaagcgcaugcgugcgcaugcguggaggca
cccgcggcgcagaucuugguggcaguagcacacucgggcgcgagccccga
gggccgggagacggguucuuccgccaggccgcuccgcggaaggugagccg
gguccuaaggacgcgcuggcccgcaaccgacaggcaagcgggcacacauu
cccgcgccgugugccaugcggcaacgcaccgugcgcggccgggcgcaggg
cuggcgccgggggcccuccucccccggcggcccgccugcggacucuugca
gcacgaggcagcccgcgccgccgccaggacucgccccccgugaagccccg
cgcacgcacacacacgcccguaccaauccgcaccagggcuccagggcgcg
caccccacggccagggcccacgcagguuugggaauucggcaagcuggauc
cgcaaccucgggacaaggauuggcuccgggcgccggagcugucgcuucca
aggggaauccgacuguuuaguaaaaacauagccuugcgccgcacgcaagg
ugaauucugcccagugcccgggucacgccggcgcgacccgcgcacgcacg
ggucaacggcgggaguaacuaugacucucuuaagguagccaaacgccucg
ucaucuaauuagugacgcgcaugaauggagcaacgagauucccacugucc
cuaccugcuccccagcgaacccacugccaagggaacgggcuuggcgcagu
cagcggggaaagaagacccuguugagcuugacucuaguguggggccgcgg
ccccgcuucgcgcagcaacgcccccagauggggaguuuggcuggggcggc
acgucugcuagaccccaacgcagacguccuacggugggcucagcgcggac
agaacccgcgcgucgagcacaagggcaaacgcccgccucacggcgccccc
ccgggugccggcgggaaaccggggccuagcgaucccucgcgcaugcacgc
cgcgucgcggggguggcugaaaaguuaccacagggauaacuggcuugugg
cggccaagcguccgcagcgacgccgcuuuuugauucuucgaugucggcuc
uuccuagcauggcguggcagcgcgcgccaaguguuggauuguucacccac
ugacagggaacgugagcuggguuuagaccgucgugagacagguuaguuuu
acccuacugagcggacacaccgggcagcgcgggcuaguacgagaggaacg
cccgugcggggccgcugguccgcgccuguccgacagggcaggugcgccgc
uacgccccgugcguguacggcuggaccucuaagccggagccgcccccccg
ugugucuaaacguuuccgccccccgcgaccacgacgcggccgggggcugg
ugcugugcgcggcgagcugcgagccgcugaggcuuccagaccccugcggg
guguu
..<<<<<<<<<.....{[[..[[<<<<<<[..<......<<<<<<<((..
..>>>>.....<<<<<...<<.)).>>......>>>>>...>>>....<<
<<<...>>>>>.>....<<<<<<.....<......>......>>>>>.>.
........<<....>>...<<<<......<<.....>>.....>>>>...
(((..........<<<<<...>>>>>.........<<<<...<<...<<<
<<......>>>>>((......<<<.....))>>>...>>.>>>>......
.........<<<<<<<........>>>>>>>....<<<<<..<<<<.>>>
>>..))).......].>>>>>>.]]...............<<....>>..
..]].........<<<<....>>>>.........}.....>>>>>>>>>.
<<<<<<..>>>>>>.<<<<........>>>><<<<<<....<<<<<<<<<
<<<<..<<<........>>>...<<....>>......>>>>>>>>>>>>>
..<<.<..<<<<<<<.....<<<<<<<<<..<<<....<<<.<<<....>
>>.>>>.....>>>...<<<..<<.<<........>>>>.>>>....>>>
>>>>>>...<<.......>>......>>>>>>...>..>.>>..<<<<<<
....<<<<<....>>>>><<<<<<<<<<.<<<.<<<<<<<<<...<<<..
.<<<.<.<<<<.<<<<..>>>>>>>.>>.>>>..>>.>...>>>>>>>.<
<<<<<<<<......>>>>>>>>>...>>>>>>>>>>>>>.>>..<<<<.<
<<<<.....>>>>>.>>>>...<<<<......>>>>..<<<<<<<...<<
<(((...<<<<<<<...........<<<.<<<<<<..>>>>>>>>>....
......))).....>>>>>>>>>>...>>>>>>><<<<...>>>>....>
>>>>>..<<<.<<.<<<......<<<<<<<<....>>>>>>>>...>>>.
>>.>>>........>>>>>><<.....<<...<<<<<<.......>>>>>
><<<<.<<<<..<<...<<<<<<...<<.....>>.>>>>>>....((<<
<<.<<...<<..<<<......>>>..>>....>>...<<<<<........
>>>>>))<<<<<<....<<<....>>>...<<<<<<<<..<<<.<<<<..
<<<<<<.<<<<<<...[[..>>>>>><<<<<.<<.<<<<...<<.....>
>......>>>>.>.>.>>>>>>>>>>>..>>.>>>>>..........>>>
>>>>>.....>>>>>>>>>>..>>...<<......>>.>>>>.<<<....
...>>>..>>>>.<<<.....<<<<<<..<<...............<<<<
<...............>>>>><<<<<<<<...>>>>>>>>..........
..<<<<<<<<<..<<<.........>>>..<<<<<<<.......>>>>>>
>...<<..<<<..<<<<<<<.<<.....<<<......>>>.....>>.>>
>>>..>>>>><<<<<<.......>>>>>>........<...........<
<<<<.......>>>>>.....>.....>>....>>.>>>>>>>.....>>
..>>>>>>..>>>.>>....>>...<<<<<<........>>>>>>....<
<<<..(((.[[......<<<<.[[<<<<..<<<<<.<<.<<<<<..<<<<
..>>>>...<<...>>.....>>>>>.>>..>>>>>...<<<.....>>>
..<<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<..
.....>>>>>>.....<<...(((>>....>>>>>>>...<<<<<<<<..
..>>>>>>>>.<<<....>>>.>>)))......<<<<<<<<.(((..>>>
>.)))>>>>>>>>.........>>>>..]]>>>>.......<<.<...<<
<<<<...<<.......>>...>>>>>>....>.>.>.......<<<<<.<
<<<<<..<<<<<<<<<......>>>>>>..>>>.<<<.........>>>.
....>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....]]
..))).>>>>..<<<<<<<<.<<<..<<<<<<<<...............>
>>>>>>><<<<<....<<<.<<<<<<<<<<<]]..>>>>>>>>>>>..>>
>..>>>>>..<<<....<<<<<.........>>>>>....>>>..>>>.>
>>>>>>>.<<..>>..<<<<<<<<<<<.......>>>>>..<<<<<<<<<
.<<<....<<<<<..<<.>>..>>>>>...>>>..>>>>.>>>>>..>>>
>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6zu5 Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		S2 R3 T5 K6 K7 V8 G9 G12 K13 Y14 G15 V16 R17 Y18 G19 S20 S21 R23 H34 A41 K44 R49 E50 V51 V52
Binding residue
(residue number reindexed from 1)		S1 R2 T4 K5 K6 V7 G8 G11 K12 Y13 G14 V15 R16 Y17 G18 S19 S20 R22 H33 A40 K43 R48 E49 V50 V51
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Apr 5 04:29:41 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zu5', asym_id = 'LPP', bs = 'BS01', title = 'Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zu5', asym_id='LPP', bs='BS01', title='Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6zu5', asym_id = 'LPP'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6zu5', asym_id='LPP')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>