Structure of PDB 8i9t Chain LP Binding Site BS01 |
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| >8i9t Chain C1 (length=2132)
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uugaccucggaucagguaggaggacccgcugaacuuaagcauaucaauaa
gcggaggaaaagaaaccaacagggauugcccuaguaacggcgagugaagc
ggcaacagcucaaauuugaaagcuggcuucggcccgcguuguaauuugga
gaggaugcuuugggcgaggcuccuucugaguucccuggaacgggacgcca
cagagggugagagccccguauaguuggaagccaagccuguguaaagcucc
uucgacgagucgaguaguuugggaaugcugcucaaaaugggagguaaauu
ucuucuaaagcuaaauaccggccagagaccgauagcgcacaaguagagug
aucgaaagaugaaaagcacuuugaaaagaggguuaaauagcacgugaaau
uguugaaagggaagcgcuugugaccagacuugcgcccggcggaucauccg
guguucucaccggugcacuccgccgggcucaggccagcaucgguucuggc
ggggggauaaaggcccagggaauguggcuccuccgggaguguuauagccc
uggguguaauacccucgccgggaccgaggaccgcgcucugcaaggaugcu
ggcguaauggucaccagcgacccgucuugaaacacggaccaaggagucaa
gguuuugcgcgaguguuuggguguaaaacccgcacgcguaaugaaaguga
acguaggugagagcuucggcgcaucaucgaccgauccugauguauucgga
uggauuugaguaggagcguuaagccuuggacccgaaagauggugaacaac
caucuaguagcugguuaccgccgaaguuucccucaggauagcagugucga
ccuucaguuuuaugagguaaagcgaaugaacuuuaaauauguaagaagcc
cuuguuacuuaacugaacgugggcauucgaauguaucgacacuagugggc
cauuuuugguaagcagaacuggcgaugcgggaugaaccgaacgcgggguu
aaggugccggaguggacgcucaucagacaccacaaaaggcguuaguacau
cuugacagcaggacgguggccauggaagucggaauccgcuaaggacugug
uaacaacucaccugccgaauguacuagcccugaaaauggauggcgcucaa
gcgucccacccauaccccgcccucaggguagaaacgaugcccugaggagu
aggcggccguggaggucagugacgaagccuagggcgugagcccgggucga
acggccucuagugcagaucuuggugguaguagcaaauuugauagaacaau
guagauaagggaagucggcgggaaucugcgagauucccacugucccuauc
uacuaucuagcgaaaccacagccaagggaacgggcuuggcaaaaucagcg
gggaagacccuguugagcuugacucuaguuugacauugugaaaagacaua
ggagguguagaauaggugggagcuucggcgccagugaaauaccacuacuc
cuauuguuuuuuuacuuauucaaugugaagacauugucagguggggaguu
ccuuuagucccucgaaauuugaggcuagaggagaaaaguuaccacaggga
uaacuggcuuguggcggccaagcguucauagcgacgucgcuuuuuggaug
ucggcucuuccuaucauaccgaagcagaauucgguaagcguuggauuguu
cacccacuaauagggaacguggaccgucgugagacagguuagucccuacu
gaugaacucgucgcaaugguaauucagcuuaguacgagaggaaccgcuga
uucagauaauugguuuuugcgguuguccgaccgggcagugccgcgaagcu
accaucugcuggauaauggcugaacgccucuaagucagaauccaugccag
aacgcgacgauaacccgcacguagacguauaagaauaggcuccggccucg
uauccuagcaggcgauuccuccgccggccucgaaguggccgucgguaauu
cgcguauugcaaagacacgcgcgggaucaaauccuuugcagacgacuuag
augugcgaaaggguccuguaagcaguagaguagccuuguuguuacgaucu
gcugaggguaagcccuccuucgccuagauuuc |
........................<<<<<<.....<......>......>
>>>>.>...<.....<<....>>..<<<<<......<<.....>>.....
>>>>>..<<<..<<.......<<.<<<....>>>.>>.......>>....
<<<<<.<<<<<<<<<..<<<<<<..<<....<<<<......>>>>.((..
....<<<.....))>>>....>>..>>>.>>>..>>>>....>>>>>>>>
.>>........<<<<<<<........>>>>>>>.....<<<<<<......
>>>>>>..>>>....>.............................<<...
.>>...............<<<<....>>>>....................
..............<<<<.<<<<<<<....<<.<<<<<<<<<<.<<.<<<
<<<....>>>>>>>>...>>>>>>>>>>.>>.<<<<<<<.<<<<<<<<<<
<<<<<.....<.<<<<<<<<......<<<<<....>>>>>.......>>>
>>>>>....>.>>>>>>>>>>>>>>>........<<...>>.....>>>>
>>>....>>>>>>>.>>>>..<<<<.<....>.>>>><<<<<<...<<<<
<<<<<.<<<<..<<<...<<<<.....>>>>...>>>...<<....>>..
.....<<<<<..<<....>>...>>>>>.<<<<<<<<....<....>...
.>>>.>>>.>>....>>>>.>>>>>>>>>.<<.<..<<<<<<<.....>>
>>>>...>..>.>>...<<<<<....<.<<<....>>>.><<<<<<<<<<
....<<.<<<<<<<.....<<<........>>.>.....>>>>>....<<
..<<<<.<......>>>>>.>>.......>>>>..>>>>>>>>.>>..<<
<<.<<<<<.....>>>>>.>>>>....<<<......>>>...<<<<<<<.
..<<<(((.....<<<<<<.....<<..........<<<.<<<<<<<<<<
.......<<<<<.<<<...<<.........>>...>>>.........<<.
.....>>...>>>>>...>>>>>>>>>>>>>..........))).>>...
>>>>>>.>>>...>>>>>>><<<<<<<<<.........>>>>>>>>>...
.>>>>>.<.<<<<<<<<.<<......<<<<.<<<<....>>>>>>>>...
>>>>>>>>>>..>.....>>>>>><<.....<.........<<<<.....
<<<<<<.<<<<<<<<....<<<<<<<<<>>.>>>>>>>>>>.>>>>>>>>
>>>..>>>>.>....>>....<<<<<........>>>>>....<<<<<.<
<<.....<<<<<<.<<<<<<.<<<<<..<<<<<<<..<<<<<<<<<<<<<
<<<<..........<<<<<......................>>>>>.>>>
>>>>.>>>>>>>>>>...<<<<...>>>>.....>>>>>>>...>>>>>.
<<<<<<<..<<<<<<...>>>>>>>>>>>>>....>>>>>.>.>>>>>>.
............<<<<<<...<<.......>>...>>>>>>.....((..
......<<<<<<..<.<<<<<<<......>>>>>>>...>.<<<.....)
)..>>>.....>>>>>..>..<<<<<<<....>>>.>>>>....>>>.>>
>>>....<<<<<<<..<<<<.<.<<<<<.................>>>>>
.><<<<<...<<<<...<<<<<<<<<<<....>>>>>..>>>>>>..>>>
>..>>>>>.<<<<...<<<<<...........>>>>>...>>>>.>>>>.
...>>>>>>>...<<<<<.<<.......<<.......<<<....>>>...
.>>........<<<<.....<<<.<<<<<.......>>>>>.>>>....>
>>>..............>>.>>>>>...<<<<<<<.............>>
....<<<<<<<<<.<<<....<<<<.<..<<<<<......>>>>>..>>>
>>...>>>....>>>>..>>>>>...>>>>>. |
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| PDB | 8i9t Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. |
| Resolution | 3.6 Å |
Binding residue
(original residue number in PDB) | V2 R3 R16 R18 S20 Y21 S25 F26 K27 R30 Q34 R43 R62 Y63 A64 S66 T67 R69 T70 K74 R82 W83 V85 K86 N97 N101 H116 Q118 V119 R126 R127 P138 Y139 M140 T156 V157 Q158 K159 |
Binding residue
(residue number reindexed from 1) | V1 R2 R15 R17 S19 Y20 S24 F25 K26 R29 Q33 R42 R61 Y62 A63 S65 T66 R68 T69 K73 R81 W82 V84 K85 N96 N100 H115 Q117 V118 R125 R126 P127 Y128 M129 T145 V146 Q147 K148 |
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| Enzyme Commision number |
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