Structure of PDB 6rm3 Chain LOO Binding Site BS01

Receptor Information
>6rm3 Chain LOO (length=98) Species: 6039 (Vairimorpha necatrix) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VNLPKVRRTHCAHCNAHTVHKVSLYKKSKDSEIVSGARRYRLKQKTIGQT
KPILKRKAKLTKKIMLKLECPKCKKIQQKVCKRAKHVVMGGEKKRKNE
Ligand information
>6rm3 Chain L50 (length=2313) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uacccacacaugggaucaauaggauaccauaacgaugaaggucguaauag
aauacgaaaguauuuaccuaauuaauauauuaauguauugauaacccuuu
gaacuuaagcauaucauuaaaaggaggaaaagaaacuaacuaggauuucu
uuaguagcagcgagugaacaagaaauaacccuccauuguaauccuuaauu
ggaguuguaaaugguuuauucuauuaauuauuauagagaauauauucguu
auuaauagaauagaauaauguacuugaguagagcugcuugguagugcagu
uugaauaaagguagaaugaaauaucuaagguuaaauauaaugguauaccg
auagaaaauaaguacugcgaaggaacuugugaaaauguguggaguuuagc
cuuauuuuuaaggacccgucuugaaacacggaccaaggagauuauaauua
uagcaagauaaaaauaaucuuuauuaacuugauuaguuauaauuauaaga
cccgaaacacagugaacuauacauguucugguugaagauaagcaaguuua
uuggaagaccauaaucauucugacgugcaaaucgaugauuuaagaugugu
auaguggcgaaagaccaaucgaacugugugguagcugguucacagcgaaa
ugucucucaggacagcaguuauuauuauauaggacauagauguaggacac
uguuauaguuaacuaugagaaaucuuuaauucuauggaauuauauaaauu
aaauuuauauaaugaaucuauuguauaacuagugggcacaugauuguaag
aaugaugugcaaaaagggaugaaccuuaugaaacauuaaauauucuaaau
aguagauauuauaccauaaauaugaugaauacauguauuauuguauaaaa
uggaagaagauuacuacuuuuaugagauguuucuaauauuuagguagcug
ugcaauuuguuuguauugaaguauauaugugaguauauauagaagaaaca
aaugagccgaucuuggaggcaguaacaauauauguauagauauagacuag
gguuuucaauuuauugaagugaaucgguguuauauaaaaacaaaaaagau
uaauaauucuuuauuaaauuauuauaagguaacuugauaaugacaguaua
uuucaauaaauuuaagauaaaugaauuaaauuuuuaacuauggauuguca
ugauaagaaauaguuaauuauauauacuugauaaaaauaaaauaauuuua
accguaccuauaccgcaucaggugucuuuguaucauaacaaauauuuuaa
auuaaaguaaguaagggaauucggcaaauuagaucuguaacuuugggaua
aagauuggcucuagcaugcuagaacuuuuacuauguaaggaaucugacug
uuuauuaaaaacauagcuuuuuguauuuacaagaagugaauucugcccag
ugcauuuguuaaaguuguguaagcgaauguaaacggcgggaguacuauga
cucucuuaagguagccaaaugccucgucauuuaauuggugacgcgcauga
auggagcaacgagauuccuacugucccuacuuacaauuuugugaaaccac
gagacaagggaacgggcuuguuauuuaucagcggggaaagaagacccugu
ugagcuugacuuuaguauguuuuaauaaauauucgaauauuuauuuauua
gaauauauggggaguuuggcuggggcgguacagcuguuaaaaaguaacac
agcuguccuaagguagaugaaugauggaugguaaccaucaguuuauuaua
agggaauaaaucugcuuuacuuuaugcauaugacuguauuuaguagggaa
accuuggccuagcgaucccaauuacauucauuauguauugggugauugaa
aaguuaccacagggauaacuggcuuguagcaggcaagcgaucauagcgac
ucugcuuuuugauucuucgaugucgucucuucugaucaucguaguguaua
uguuacgaaguguuggauuguucacccgguaaugaggaacgugagauggg
uuuagaccgucgugagacagguuaguuuuacccuacuguaaguauuuuug
agugaacuuugauaguacgagaggaacucuaagugaugaccacugguagu
gcgauuaacuauuaaguuauguugcuuagcuacgucguuucgauuaaggc
ugaaagccucuuaagccugaagcguagcucaaagauacauuuaggagaau
acuacucuuuuaagcagaacuguaagaaugaagguguaugccgacauuuu
gagguuacugcuu
.<<<<<<<<<<.....<<<..<<<<<<<<<..<.....<<<<<<<.....
...>>>.........>>>>....<<<<<<<..>>>>>>>>....<<<<<<
.....<......>......>>>>>.>.........<<....>>.<<<<<<
<.....<<.....>>....>>>>>>>.<<<...........<<<......
>>>...........<<<<<<<<<<<<<<.........<<<<..>>>>...
>>>>>>>>>>>>>>................<<<<<<<........>>>>>
>>......<<<<<.(((((..>>>>>..>>>........>>>>>>>.>>.
..............<<....>>....>>>.....>>>>>>>>.>>....<
<<<<....>>>>>..<<<<........>>>>.<<<<<....<<<<<<<<<
<<<<..<<<.......>>>...<......>.....>>>>>>>>>>>>>..
<<.<..<<<<<<<.....<<<<<<<<<.<<<<....<<<<<<<..>>>>>
>>.....>>>>.<<<<..<<.<<........>>>>.>>>>...>>>>>>>
>>...<<.......>>......>>>>>>...>..>.>>..<<<<<<....
<<<<<....>>>>><<<<<<<<<.....<<<.<<<<<<<<...<<<<...
<..<<<<<<..>>>>>>..>..>>.>>...>>>>>>..<<<<<<<<.<..
....>>>>>>>>>...>>>>>.>.>>>>>>.>>..<<<<<<.<<<.....
>>>.>>>>>>...<<<<......>>>>..<<<<<<<...<<<(((.....
.<<<<..............<<<<<<<.<<<<<<>>>>>>>>>>>>>....
.....))).....>>>>...>>>...>>>>>>><<.....>>....>>>>
>><.<<<<<<<<........<<<<<<<<....>>>>>>>>.....>>>>>
>>>..>.....>>>>>.<<.....<<<<<<<....>>><<<<.<<<<..<
<...<<<<<<..>>>>>>....((<<<<<<.........>>...<<<<<.
.......>>>>>))<<<<<<<<...<<<....>>>.........<<<<<<
<......<<<<<<<<....[[[...>>>>>>>><<<<<<<<...<<....
.>>......>>>>>>>>....>>>>>>>.............>>>>>>.>>
>>>>..>>....<<......>>.>>>><<<........>>>.>>>>..<<
......<<<<<<<.<<.........<.....<<<<<....<<..>>....
.>>>>><<.<<<<<....>>>>>.>>...........<<<<<<<<<..<<
<.........>>>..<<<<<<<........>>>>>>>...<<..<<<..<
<<<<<<.<<<...........>>>.>>>>>..>>>>><<<<<<......>
>>>>>........<...........<<<<<<.....>>>>>>.....>..
...>>....>>.>>>>>>>..>..>>.>>>>>>>..>>>>>>....>>..
..<<<<<<........>>>>>>......<<<..<<<.<<......<<<<.
<<<<<<..<<<<..<<<<<<<..<<<<<<<<<<..>>>>>>>>>>.....
.>>>>>>>...>>>>...<<<.....>>>..<<<<<<...........>>
>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....<<.[.
(((>>....>>>>>>>...<<..<<<<<......>>>>>..>>.<<<...
.>>>.>>)))].....<<<<<<.<<<.))))).>>>>>>>>>........
.>>>>..>>>>>>.......<<.<.<.<<<<<<...<<.......>>...
>>>>>>...>>..>>.......<<<<<.<<<<<...<<<<<<<<<.....
.>>>>>>>..>>.<<<.........>>>......>>>>..>...>>>.>>
....<<<<<<<....>>>.>>>>....>>..>>>.>>>...<<<<<<<<<
<<<..<<<<.<<...............>>.>>>>.<<<<<....<<<...
<<<<<<<<<.]]]..>>>>.>>>>>...>>>..>>>>>..<<.<..<<<<
<............>>>>>...>>>..>>>>>>>>>>>>.....<<<<...
....>>>>....<<<<<<<<<....<<<<<..<<<....>>>..>>>>>.
..>>>>.>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6rm3 Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		V2 N3 P5 R8 R9 H18 K28 V35 G37 R39 K44 K46 P53 I54 R57 K58 K60 K63 K64 K76 Q79 R84 K86 K94 K95
Binding residue
(residue number reindexed from 1)		V1 N2 P4 R7 R8 H17 K27 V34 G36 R38 K43 K45 P52 I53 R56 K57 K59 K62 K63 K75 Q78 R83 K85 K93 K94
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Apr 19 12:43:34 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6rm3', asym_id = 'LOO', bs = 'BS01', title = 'Evolutionary compaction and adaptation visualize...structure of the dormant microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6rm3', asym_id='LOO', bs='BS01', title='Evolutionary compaction and adaptation visualize...structure of the dormant microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6rm3', asym_id = 'LOO'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6rm3', asym_id='LOO')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>