Structure of PDB 4v3p Chain LO Binding Site BS01

Receptor Information
>4v3p Chain LO (length=144) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHP
GYFGKVGMRYFHRLSNRFHCPAVNVERLWSMVPAEAGAGAGKAPVIDVTQ
FGYTKVLGKGMLPPERPIVVKAKLISKVAEKKIKAAGGAVLLTA
Ligand information
>4v3p Chain L1 (length=3352) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gcgcgaccccaggucaggcgggacuaccgcugaguuuaagcauauaaaua
agcggaggagaagaaacuuacaaggauuccccuaguaacggcgagcgaac
cgggagcagcccaagaaucgggcggcugugccguccgaauuguagucugg
agaggcguccucagcgacggaccgggcccaaguccccuggaaaggggcgc
cugggagggugagagccccguccggcccggacccugucgccccacgaggc
gccgucaacgagucggguuguuugggaaugcagcccaaaucgggcgguag
acuccguccaaggcuaaauacaggcgagagaccgauagcgaacaaguacc
gcgagggaaagaugaaaaggacuuugaaaagagagucaaagagugcuuga
aauugccgggagggaagcggaugggggccggcgaugcgccccggccguau
gcggaacggcucuugcugguccgccgcucggcucggggcguggacuguug
ucggccgcgccggcggccaaagcccgggggcuccgcgcccccggcagccg
ucgucggcacggccgguacccgcgcgccgaaaggcgugccccucggggca
cugcgcugcaacgcccugcgggcuccccauccgacccgucuugaaacacg
gaccaaggagucugacaugcgugcgagucgacggguucugaaaccuggga
ugcgcaaggaagcugacgagcgggaggcccucacgggccgcaccgcuggc
cgacccugaucuucugugaaggguucgaguuggagcacgccugucgggac
ccgaaagauggugaacuaugccugagcggggcgaagccagaggaaacucu
gguggaggcucgaagcgauacugacgugcaaaucguucgucugacuuggg
uauaggggcgaaagacuaaucgaaccaucuaguagcugguucccuccgaa
guuucccucaggauagcuggagcccauuacgaguucuaucagguaaagcc
aaugauuagaggcauuggggacgcaacguccucgaccuauucucaaacuu
uaaauagguaggauggcgcggcugcuucggugagccgugccauggaaucg
ggugcuccaagugggccauuuuugguaagcagaacuggcgaugcgggaug
aaccggaagccggguuacggugcccaacugcgcgcuaaccuagaacccac
aaaggguguuggucgauuaagacagcaggacgguggucauggaagucgaa
auccgcuaaggaguguguaacaacucaccugccgaaucaacuagccccga
aaauggauggcgcugaagcgcgcgacccacacccggccaucugggcgagu
gccaugccccgaugaguaggagggcgcggcggccaugcaaaacccgggcg
cgagcccgggcggagcggccgucggugcagaucuuggugguaguagcaaa
uauucaaaugagaacuuugaaggccgaagaggagaaagguuccaugugaa
cggcacuugcacauggguaagccgauccuaagggaagggguaaccccggc
agauagcgcgaucacgcgcauccccgaaagggaaucggguuaagauuccc
gagccggguguggcgguugacggcgacguuaggaaguccggagacgccgg
cgggggccucgggaagaguuaucuuuucugcuuaacggccugccaacccu
ggaaacgguucagccggagguagguccaguggccggaagagcacacgucg
cgcgguguccggugcgcccccggcggcccaugaaaauccggaggaccgag
uaccgucacgcccggucguacucauaaccgcaucaggucuccaaggugaa
cagccucuggccaauggaacaauguaggcaagggaagucggcaaaacgga
uccguaacuucgggaaaaggauuggcucugaggacugggcucgggggucc
cggccccgaacccgucggcugucggcggauugcucgagcugcucacgcgg
cgagagcgggucgccgcgugccggccgggggacggaccgggaaucgcccc
uucgggggcuuuccccgagcaugaaacagucgacucagaacugguacgga
caaggggaauccgacuguuuaauuaaaacaaagcauugcgaugguccucg
cggaugcugacgcaaugugauuucugcccagugcucugaaugucaaagug
aagaaauucaaccaagcgcggguaaacggcgggaguaacuaugacucucu
uaagguagccaaaugccucgucaucuaauuagugacgcgcaugaaugaau
uaacgagauucccacugucccugucuacuauccagcgaaaccacagccaa
gggaacgggcuuggcggaaucagcggggaaagaagacccuguugagcuug
acucuaguccgacuuugugaaaugacuugagagguguaggauaaguggga
gcccucacgggcgcaagugaaauaccacuacuuuuaacguuauuuuacuu
auuccgugggucggaagcggggcaugccccaaggcccggucuuaccgggc
cgauccgggcggaagacauugucagguggggaguuuggcuggggcggcca
aucuguuaaaagauaacgcagguguccuaagaugagcucaacgagaacag
aaaucucguguggaacaaaaggguaaaagcucguuugauucugauuucca
guacgaauacgaaccgugaaagcguggccuaucgauccuuuagacuucgg
aguuugaagcuagaggugucagaaaaguuaccacagggauuacuggcuug
uggcagccaagcguucauagcgacguugcuuuuugauccuucgaugucgg
cucuuccuaucauugcgaagcagaauucaccaaguguuggauuguucacc
caccaauagggaacgugagcuggguuuagaccgucgugagacagguuagu
uuuacccuacugaugacagugucgcgauaguaauucaaccuaguacgaga
ggaaccguugauucacacaauuggucaucgcgcugguugaaaagccagug
gcgcgaagcuaccgugugccggauuaugacugaacgccucuaagucagaa
uccaagcuagcaugcgacgccugcgcccgccgcccgccccgacccacguu
aggggcgcuugcgcccccaagggcccgugccauuggcuaagccgguccgg
ccgaagugccgcggucggccgccucgaagcucccuucccaacgggcggug
ggcuaauccuuugcagacgacuuaaauacgcgacggggauuguaaguggc
agaguggccuugcugccacgauccacugagaucccgcgucgcacggauuc
gu
...........................<<<<.....<......>......
>>>.>...........<<....>>..<<<<<.......<.....>.....
.>>>>>..<<<......<<<<<<<<<...>>>>>>>>>............
.<<<<<<.<<<<.<<<<<<<.<<<<<<<.....<<<<......>>>>.((
......<<<.....))>>>....>>>>>>>...>>>>>>>.....>>>>>
>>>.>>........<<<<<<<........>>>>>>>.....<<<<<..[[
....>>>>>..>>>................................<.<<
....>>...>...........<<<<....>>>>.................
...................<<<<<<<<<<.<<...<<<<<<<<<<<<..<
<<<<<.<<<<....>>>>.>>>>.>>..>>>>.>>>>>>>>....<<<<<
<<<<<<<.<<<<<<<<.......<<<<<<<<.....>>>>>>>>......
>>>>>>>>.>>>>>>>.....<<<<<<<....>>><<<<<<....>>>>>
>.>>>>..>>>>>....>>.>>>.>>>>>>>....<<<<........>>>
><<<<<<.....<<<<<.<<<<<<..<<...<<<<<<....>>>>>>...
.>>...<<....>>....<<<<<<.<<<<<....>>>>>.>.>>>>>...
<<<<<<<...<....>...>>>>>.>>.......>>>>>>.>>>>>...<
<.<..<<<<<<<.....<<<<<<<<<..<<<....<<<<<<<....>>>>
>>>.....>>>...<<<<.<<.<<........>>>>>>>>....>>>>>>
>>>...<<.......>>......>>>>>>...>..>.>>..<<<<<<...
.<.<<<....>>>.><.<<<<<<......<<...<<<<<<...<<<<<..
...<...<.<<<..(<<<<<<......)>>>>>>.>>>.>...>...>>>
>>....>>>>>>..<<<<<<<<<<<....>>.>>>>>>>>>.......>>
...>>>>>>..>..<<<<.<<<<<.....>>>>>.>>>>....<<<....
..>>>...<<<<<<<...<<<(((.....<<<<<<...............
...<<<.<<<<<<.<<<.......<<<<<.<<....<<.........>>.
...>>.........<<......>>...>>>>>...>>>.>>>>>>>>>..
........)))...{..>>>>>>.>>>...>>>>>>><<<<.<<<<<...
....>>>>>.>>>>....>>>>>>..<<<<<<<<........<<<<<<<.
...>>>>>>>......>>>>>>>>........>>>>>><<.....<<...
..<<<<<<.......>>>>>><<<<.....<<<<<.<<...<<<<<<...
<<.....>>.>>>>>>....((<<<<<<...<<<...<<<....>>>...
.....<<<<<....>>>>>...>>>....>>>..<<<<<........>>>
>>))<<<<<<<<<.<<<..<<<....>>>...<...<<<<<<...<<<<.
<<<.<<..<<<...<<<<.......>>>>..<.....<..........<<
.....<<<<...>>>>......>>.........>......>.<<.<<...
..>>>>...>>>.....>>>>>.>>>>.........>>>>>>...>....
.>>>.>>>>>>>>>.>>>..>>.....<<......>>>>>>>..<<<...
..>>>...>>>>..<<<<.....<<<<<<<.<<...............<<
<<<.....<..>......>>>>><<.<<<<<<<<<<<.<<<<<<<<<<<<
<<<..<<<..<<<<<<<<<<<.<<<<<<.<<<<<<..<<<<<....>>>>
>..>>>>>>.>>>>>>>>.>>>>>>..>>>..>>>.>>>>>>...<<<<<
....>>>>>..>>>>>>>>>......>>>>>..>>>>>>.>>........
....<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<<...
.>>>.......>>>>>>>...<<<.<<<..<<<<<<....<<<.....<<
<<....>>>>.....>>>.>>>>..>>>>><<<<<<.......>>>>>>.
.......<...........<<<<<.......>>>>>.....>....>>>.
...>>.>>>>>>>.....>>.>>>>>>>..>>>>>>....>>....<<<<
<........>>>>>....<<<<<..<<<.<<......<<<<.<<<<<<..
<<<<<.<<<.<<<...<<<<<<<<<.<<<<<<<...........<<<<..
<<<......>>>............>>>>..>>>>>>>..>>>>>>>>>..
.<<<<<....<<<<<...<<<<....>>>>..<<<<<<<<...>>>>>>>
>..>>>>.>>>>>>......>>>.>>>..>>>>>...<<<.....>>>..
<<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<....
...>>>>>>.....<<...(((>>....>>>>>>>...<<<..<<<<...
....>>>>..>>>.<<<....>>>.>>))).......<<<<<<.<<<<..
..]].>>>>>>>>>>..........>>>>..>>>>>>.......<<.<..
.<<<<<<...<<.......>>...>>>>>>....>.>.>.......<<<<
<..<<<<<..<<<.<.<<<......>>>.>...>>>.<<<.........>
>>.....>>>>>......>>>.>>....<<<<<<<....>>>.>>>>...
.>>..>>>.>>>>>....<<<<<<...<<<<.<.<<<<<...........
......>>>>>.><<<<<....<<<...<<<<<<<<<......>>>>...
>>>>>..>>>...>>>>>..<<<...<<<<<...........>>>>>...
>>>..>>>>.....>>>>>>.....<<<<<<<<<<<....<<.<<....}
..<<<<<....>>>>>....>>..<<<.((...>>>....<<<<<<<<<<
<......>>>>.>>>>>>>.))......<...>..>>....>>>>>>>>>
>>..<<<<.<.............>.....<<<<<<<<..<<....<<<<.
...<<<<<......>>>>>...>>>>...>>..>>.>>>>>>...>>>>.
..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v3p The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes.
Resolution34.0 Å
Binding residue
(original residue number in PDB)
M1 T2 T3 R4 F5 K6 K7 R9 K10 K11 R12 H14 V15 H19 G20 R21 I22 K24 K27 H28 P29 R32 G33 N34 A35 G36 M38 L44 F45 Y48 Y52 F53 W79 S80 G91 K92 A93 K105 L107 G108 K109 K134
Binding residue
(residue number reindexed from 1)
M1 T2 T3 R4 F5 K6 K7 R9 K10 K11 R12 H14 V15 H19 G20 R21 I22 K24 K27 H28 P29 R32 G33 N34 A35 G36 M38 L44 F45 Y48 Y52 F53 W79 S80 G91 K92 A93 K105 L107 G108 K109 K134
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Fri Nov 15 15:30:56 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v3p', asym_id = 'LO', bs = 'BS01', title = 'The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v3p', asym_id='LO', bs='BS01', title='The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412,0015934', uniprot = '', pdbid = '4v3p', asym_id = 'LO'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0015934', uniprot='', pdbid='4v3p', asym_id='LO')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>