Structure of PDB 6zu5 Chain LMM Binding Site BS01

Receptor Information
>6zu5 Chain LMM (length=54) Species: 235221 (Paranosema locustae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DKQMNENDKALALKRKEAMICRSCYARLAPRAINCRKKKKCGGSNNLRPK
KKLK
Ligand information
>6zu5 Chain L50 (length=2455) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caccccggugggggaucccucggccugcgcgccgggcaaggacgcggacg
cacgcgauagacggcacgauccucagacacgacugccggucuccgacagc
ggcgcagccgcagacaaccccccggacuuaagcauaucacuagggggcgg
agaagaaaccaacagggauuccugcaguagcggcgagcgaacagggacga
gcccgcauggcaaucggcaucgccgaguugugacagcgcaccgcgaacgc
cccggacagggcggccacagagggcgacagccccguagcagcgcgcagcg
gagcgaguagcgcugcuuggucaugcagcgcgaagcggugguggcgccau
cgaaggcuaaauacgccgcaggaccgauagcgcacaaguaccgcgagggg
acggcgacgagcagcccgcaggggcggcgaaagcgugaaaccaccggggc
gcccacuugugggccccgucuugaaacacggaccaaggagugcaugugcg
cagcgaguccgcuccgcggcgcagcgaaggccaucgagcugcgcacaugc
gacccgauaggcagugaacuacgccugggcagggcgaagcccgcggaaac
gcagguggaggccccgagccguucugacgugcaauucgauggcgcgaccu
gggcguagcggcgaaagaccaaucgaacugccugguagcugguucccucc
gaaaugucccgcaggacagcgggcgccccgcaggucugccgcguagagca
auggcgcggcguccggcgccggcgcacccccaaacugcgaagcggcaggg
cgcgcgcagcagcgugcgcgcgcacaacugcgggcgccuagugggccgcc
gcugguaagcagcgccggcaaugaggacacaaccucgugcgcgggcaagg
gaccccagcugcgcacacagacgaagggcgcgggcgcgcccgccccgaaa
auggacggugcucagcgcagccccgaccccgcgcacgcacagcgugguag
gagggcgcgccggcgccgcagaagcgcaugcgugcgcaugcguggaggca
cccgcggcgcagaucuugguggcaguagcacacucgggcgcgagccccga
gggccgggagacggguucuuccgccaggccgcuccgcggaaggugagccg
gguccuaaggacgcgcuggcccgcaaccgacaggcaagcgggcacacauu
cccgcgccgugugccaugcggcaacgcaccgugcgcggccgggcgcaggg
cuggcgccgggggcccuccucccccggcggcccgccugcggacucuugca
gcacgaggcagcccgcgccgccgccaggacucgccccccgugaagccccg
cgcacgcacacacacgcccguaccaauccgcaccagggcuccagggcgcg
caccccacggccagggcccacgcagguuugggaauucggcaagcuggauc
cgcaaccucgggacaaggauuggcuccgggcgccggagcugucgcuucca
aggggaauccgacuguuuaguaaaaacauagccuugcgccgcacgcaagg
ugaauucugcccagugcccgggucacgccggcgcgacccgcgcacgcacg
ggucaacggcgggaguaacuaugacucucuuaagguagccaaacgccucg
ucaucuaauuagugacgcgcaugaauggagcaacgagauucccacugucc
cuaccugcuccccagcgaacccacugccaagggaacgggcuuggcgcagu
cagcggggaaagaagacccuguugagcuugacucuaguguggggccgcgg
ccccgcuucgcgcagcaacgcccccagauggggaguuuggcuggggcggc
acgucugcuagaccccaacgcagacguccuacggugggcucagcgcggac
agaacccgcgcgucgagcacaagggcaaacgcccgccucacggcgccccc
ccgggugccggcgggaaaccggggccuagcgaucccucgcgcaugcacgc
cgcgucgcggggguggcugaaaaguuaccacagggauaacuggcuugugg
cggccaagcguccgcagcgacgccgcuuuuugauucuucgaugucggcuc
uuccuagcauggcguggcagcgcgcgccaaguguuggauuguucacccac
ugacagggaacgugagcuggguuuagaccgucgugagacagguuaguuuu
acccuacugagcggacacaccgggcagcgcgggcuaguacgagaggaacg
cccgugcggggccgcugguccgcgccuguccgacagggcaggugcgccgc
uacgccccgugcguguacggcuggaccucuaagccggagccgcccccccg
ugugucuaaacguuuccgccccccgcgaccacgacgcggccgggggcugg
ugcugugcgcggcgagcugcgagccgcugaggcuuccagaccccugcggg
guguu
..<<<<<<<<<.....{[[..[[<<<<<<[..<......<<<<<<<((..
..>>>>.....<<<<<...<<.)).>>......>>>>>...>>>....<<
<<<...>>>>>.>....<<<<<<.....<......>......>>>>>.>.
........<<....>>...<<<<......<<.....>>.....>>>>...
(((..........<<<<<...>>>>>.........<<<<...<<...<<<
<<......>>>>>((......<<<.....))>>>...>>.>>>>......
.........<<<<<<<........>>>>>>>....<<<<<..<<<<.>>>
>>..))).......].>>>>>>.]]...............<<....>>..
..]].........<<<<....>>>>.........}.....>>>>>>>>>.
<<<<<<..>>>>>>.<<<<........>>>><<<<<<....<<<<<<<<<
<<<<..<<<........>>>...<<....>>......>>>>>>>>>>>>>
..<<.<..<<<<<<<.....<<<<<<<<<..<<<....<<<.<<<....>
>>.>>>.....>>>...<<<..<<.<<........>>>>.>>>....>>>
>>>>>>...<<.......>>......>>>>>>...>..>.>>..<<<<<<
....<<<<<....>>>>><<<<<<<<<<.<<<.<<<<<<<<<...<<<..
.<<<.<.<<<<.<<<<..>>>>>>>.>>.>>>..>>.>...>>>>>>>.<
<<<<<<<<......>>>>>>>>>...>>>>>>>>>>>>>.>>..<<<<.<
<<<<.....>>>>>.>>>>...<<<<......>>>>..<<<<<<<...<<
<(((...<<<<<<<...........<<<.<<<<<<..>>>>>>>>>....
......))).....>>>>>>>>>>...>>>>>>><<<<...>>>>....>
>>>>>..<<<.<<.<<<......<<<<<<<<....>>>>>>>>...>>>.
>>.>>>........>>>>>><<.....<<...<<<<<<.......>>>>>
><<<<.<<<<..<<...<<<<<<...<<.....>>.>>>>>>....((<<
<<.<<...<<..<<<......>>>..>>....>>...<<<<<........
>>>>>))<<<<<<....<<<....>>>...<<<<<<<<..<<<.<<<<..
<<<<<<.<<<<<<...[[..>>>>>><<<<<.<<.<<<<...<<.....>
>......>>>>.>.>.>>>>>>>>>>>..>>.>>>>>..........>>>
>>>>>.....>>>>>>>>>>..>>...<<......>>.>>>>.<<<....
...>>>..>>>>.<<<.....<<<<<<..<<...............<<<<
<...............>>>>><<<<<<<<...>>>>>>>>..........
..<<<<<<<<<..<<<.........>>>..<<<<<<<.......>>>>>>
>...<<..<<<..<<<<<<<.<<.....<<<......>>>.....>>.>>
>>>..>>>>><<<<<<.......>>>>>>........<...........<
<<<<.......>>>>>.....>.....>>....>>.>>>>>>>.....>>
..>>>>>>..>>>.>>....>>...<<<<<<........>>>>>>....<
<<<..(((.[[......<<<<.[[<<<<..<<<<<.<<.<<<<<..<<<<
..>>>>...<<...>>.....>>>>>.>>..>>>>>...<<<.....>>>
..<<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<..
.....>>>>>>.....<<...(((>>....>>>>>>>...<<<<<<<<..
..>>>>>>>>.<<<....>>>.>>)))......<<<<<<<<.(((..>>>
>.)))>>>>>>>>.........>>>>..]]>>>>.......<<.<...<<
<<<<...<<.......>>...>>>>>>....>.>.>.......<<<<<.<
<<<<<..<<<<<<<<<......>>>>>>..>>>.<<<.........>>>.
....>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....]]
..))).>>>>..<<<<<<<<.<<<..<<<<<<<<...............>
>>>>>>><<<<<....<<<.<<<<<<<<<<<]]..>>>>>>>>>>>..>>
>..>>>>>..<<<....<<<<<.........>>>>>....>>>..>>>.>
>>>>>>>.<<..>>..<<<<<<<<<<<.......>>>>>..<<<<<<<<<
.<<<....<<<<<..<<.>>..>>>>>...>>>..>>>>.>>>>>..>>>
>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zu5 Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		R87 R94 Y97 R99 A101 R103 I105 N106 R108 K109 K110 K111 K112 G114 N117 R120 K122 K123
Binding residue
(residue number reindexed from 1)		R15 R22 Y25 R27 A29 R31 I33 N34 R36 K37 K38 K39 K40 G42 N45 R48 K50 K51
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 21:41:37 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zu5', asym_id = 'LMM', bs = 'BS01', title = 'Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zu5', asym_id='LMM', bs='BS01', title='Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6zu5', asym_id = 'LMM'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6zu5', asym_id='LMM')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>