Structure of PDB 6zu5 Chain LC0 Binding Site BS01

Receptor Information
>6zu5 Chain LC0 (length=325) Species: 235221 (Paranosema locustae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DTVNCYGIDGETVEKQLEMPDVLRVPIRKDLVEDAFRCVRMDNRQPYAVS
PNAGMQHSAHSWGTGRAMARVPRVSGSGTTRSGQGAFANFCRKGRLAHPT
KVIRRWQRKFNLNAKRHAEAMALAATAIPPLVESRGHRIAGVKMIPLVVS
NSIKEIKSTKEAFEMLKRFGLAEELARVKESKCIRAGKGKMRNRRYVMKK
GLLIIYDNQSDIQKAFRNIAGVDLACVDSLSLLDLCPGSHLGRLVMWTLG
AFEKLNEIYGQYGKEAPLTSGYFLPTNVVSKDDVESLFFSDEIQAFLDVP
NLIKYEKTSRKPETIESLNPYLNLM
Ligand information
>6zu5 Chain L50 (length=2455) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caccccggugggggaucccucggccugcgcgccgggcaaggacgcggacg
cacgcgauagacggcacgauccucagacacgacugccggucuccgacagc
ggcgcagccgcagacaaccccccggacuuaagcauaucacuagggggcgg
agaagaaaccaacagggauuccugcaguagcggcgagcgaacagggacga
gcccgcauggcaaucggcaucgccgaguugugacagcgcaccgcgaacgc
cccggacagggcggccacagagggcgacagccccguagcagcgcgcagcg
gagcgaguagcgcugcuuggucaugcagcgcgaagcggugguggcgccau
cgaaggcuaaauacgccgcaggaccgauagcgcacaaguaccgcgagggg
acggcgacgagcagcccgcaggggcggcgaaagcgugaaaccaccggggc
gcccacuugugggccccgucuugaaacacggaccaaggagugcaugugcg
cagcgaguccgcuccgcggcgcagcgaaggccaucgagcugcgcacaugc
gacccgauaggcagugaacuacgccugggcagggcgaagcccgcggaaac
gcagguggaggccccgagccguucugacgugcaauucgauggcgcgaccu
gggcguagcggcgaaagaccaaucgaacugccugguagcugguucccucc
gaaaugucccgcaggacagcgggcgccccgcaggucugccgcguagagca
auggcgcggcguccggcgccggcgcacccccaaacugcgaagcggcaggg
cgcgcgcagcagcgugcgcgcgcacaacugcgggcgccuagugggccgcc
gcugguaagcagcgccggcaaugaggacacaaccucgugcgcgggcaagg
gaccccagcugcgcacacagacgaagggcgcgggcgcgcccgccccgaaa
auggacggugcucagcgcagccccgaccccgcgcacgcacagcgugguag
gagggcgcgccggcgccgcagaagcgcaugcgugcgcaugcguggaggca
cccgcggcgcagaucuugguggcaguagcacacucgggcgcgagccccga
gggccgggagacggguucuuccgccaggccgcuccgcggaaggugagccg
gguccuaaggacgcgcuggcccgcaaccgacaggcaagcgggcacacauu
cccgcgccgugugccaugcggcaacgcaccgugcgcggccgggcgcaggg
cuggcgccgggggcccuccucccccggcggcccgccugcggacucuugca
gcacgaggcagcccgcgccgccgccaggacucgccccccgugaagccccg
cgcacgcacacacacgcccguaccaauccgcaccagggcuccagggcgcg
caccccacggccagggcccacgcagguuugggaauucggcaagcuggauc
cgcaaccucgggacaaggauuggcuccgggcgccggagcugucgcuucca
aggggaauccgacuguuuaguaaaaacauagccuugcgccgcacgcaagg
ugaauucugcccagugcccgggucacgccggcgcgacccgcgcacgcacg
ggucaacggcgggaguaacuaugacucucuuaagguagccaaacgccucg
ucaucuaauuagugacgcgcaugaauggagcaacgagauucccacugucc
cuaccugcuccccagcgaacccacugccaagggaacgggcuuggcgcagu
cagcggggaaagaagacccuguugagcuugacucuaguguggggccgcgg
ccccgcuucgcgcagcaacgcccccagauggggaguuuggcuggggcggc
acgucugcuagaccccaacgcagacguccuacggugggcucagcgcggac
agaacccgcgcgucgagcacaagggcaaacgcccgccucacggcgccccc
ccgggugccggcgggaaaccggggccuagcgaucccucgcgcaugcacgc
cgcgucgcggggguggcugaaaaguuaccacagggauaacuggcuugugg
cggccaagcguccgcagcgacgccgcuuuuugauucuucgaugucggcuc
uuccuagcauggcguggcagcgcgcgccaaguguuggauuguucacccac
ugacagggaacgugagcuggguuuagaccgucgugagacagguuaguuuu
acccuacugagcggacacaccgggcagcgcgggcuaguacgagaggaacg
cccgugcggggccgcugguccgcgccuguccgacagggcaggugcgccgc
uacgccccgugcguguacggcuggaccucuaagccggagccgcccccccg
ugugucuaaacguuuccgccccccgcgaccacgacgcggccgggggcugg
ugcugugcgcggcgagcugcgagccgcugaggcuuccagaccccugcggg
guguu
..<<<<<<<<<.....{[[..[[<<<<<<[..<......<<<<<<<((..
..>>>>.....<<<<<...<<.)).>>......>>>>>...>>>....<<
<<<...>>>>>.>....<<<<<<.....<......>......>>>>>.>.
........<<....>>...<<<<......<<.....>>.....>>>>...
(((..........<<<<<...>>>>>.........<<<<...<<...<<<
<<......>>>>>((......<<<.....))>>>...>>.>>>>......
.........<<<<<<<........>>>>>>>....<<<<<..<<<<.>>>
>>..))).......].>>>>>>.]]...............<<....>>..
..]].........<<<<....>>>>.........}.....>>>>>>>>>.
<<<<<<..>>>>>>.<<<<........>>>><<<<<<....<<<<<<<<<
<<<<..<<<........>>>...<<....>>......>>>>>>>>>>>>>
..<<.<..<<<<<<<.....<<<<<<<<<..<<<....<<<.<<<....>
>>.>>>.....>>>...<<<..<<.<<........>>>>.>>>....>>>
>>>>>>...<<.......>>......>>>>>>...>..>.>>..<<<<<<
....<<<<<....>>>>><<<<<<<<<<.<<<.<<<<<<<<<...<<<..
.<<<.<.<<<<.<<<<..>>>>>>>.>>.>>>..>>.>...>>>>>>>.<
<<<<<<<<......>>>>>>>>>...>>>>>>>>>>>>>.>>..<<<<.<
<<<<.....>>>>>.>>>>...<<<<......>>>>..<<<<<<<...<<
<(((...<<<<<<<...........<<<.<<<<<<..>>>>>>>>>....
......))).....>>>>>>>>>>...>>>>>>><<<<...>>>>....>
>>>>>..<<<.<<.<<<......<<<<<<<<....>>>>>>>>...>>>.
>>.>>>........>>>>>><<.....<<...<<<<<<.......>>>>>
><<<<.<<<<..<<...<<<<<<...<<.....>>.>>>>>>....((<<
<<.<<...<<..<<<......>>>..>>....>>...<<<<<........
>>>>>))<<<<<<....<<<....>>>...<<<<<<<<..<<<.<<<<..
<<<<<<.<<<<<<...[[..>>>>>><<<<<.<<.<<<<...<<.....>
>......>>>>.>.>.>>>>>>>>>>>..>>.>>>>>..........>>>
>>>>>.....>>>>>>>>>>..>>...<<......>>.>>>>.<<<....
...>>>..>>>>.<<<.....<<<<<<..<<...............<<<<
<...............>>>>><<<<<<<<...>>>>>>>>..........
..<<<<<<<<<..<<<.........>>>..<<<<<<<.......>>>>>>
>...<<..<<<..<<<<<<<.<<.....<<<......>>>.....>>.>>
>>>..>>>>><<<<<<.......>>>>>>........<...........<
<<<<.......>>>>>.....>.....>>....>>.>>>>>>>.....>>
..>>>>>>..>>>.>>....>>...<<<<<<........>>>>>>....<
<<<..(((.[[......<<<<.[[<<<<..<<<<<.<<.<<<<<..<<<<
..>>>>...<<...>>.....>>>>>.>>..>>>>>...<<<.....>>>
..<<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<..
.....>>>>>>.....<<...(((>>....>>>>>>>...<<<<<<<<..
..>>>>>>>>.<<<....>>>.>>)))......<<<<<<<<.(((..>>>
>.)))>>>>>>>>.........>>>>..]]>>>>.......<<.<...<<
<<<<...<<.......>>...>>>>>>....>.>.>.......<<<<<.<
<<<<<..<<<<<<<<<......>>>>>>..>>>.<<<.........>>>.
....>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....]]
..))).>>>>..<<<<<<<<.<<<..<<<<<<<<...............>
>>>>>>><<<<<....<<<.<<<<<<<<<<<]]..>>>>>>>>>>>..>>
>..>>>>>..<<<....<<<<<.........>>>>>....>>>..>>>.>
>>>>>>>.<<..>>..<<<<<<<<<<<.......>>>>>..<<<<<<<<<
.<<<....<<<<<..<<.>>..>>>>>...>>>..>>>>.>>>>>..>>>
>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zu5 Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		R30 R39 R42 M43 R46 Q47 P48 Y49 A50 V51 S52 A55 G56 M57 Q58 H59 S60 S63 T66 G67 A69 M70 A71 R72 V73 P74 S77 G78 S79 G80 T81 T82 R83 Q86 G87 N91 F92 C93 R94 K95 R97 L98 A99 H100 P101 K103 I105 R106 R107 R110 K111 F112 N113 L114 N115 H119 R137 T161 K181 R187 A188 G189 K190 K192 M193 R194 R196 Y198 K201 K202 K216 R219 N220 P239 G240 H242 Y307 K309 T310 R312 K313
Binding residue
(residue number reindexed from 1)		R28 R37 R40 M41 R44 Q45 P46 Y47 A48 V49 S50 A53 G54 M55 Q56 H57 S58 S61 T64 G65 A67 M68 A69 R70 V71 P72 S75 G76 S77 G78 T79 T80 R81 Q84 G85 N89 F90 C91 R92 K93 R95 L96 A97 H98 P99 K101 I103 R104 R105 R108 K109 F110 N111 L112 N113 H117 R135 T159 K179 R185 A186 G187 K188 K190 M191 R192 R194 Y196 K199 K200 K214 R217 N218 P237 G238 H240 Y305 K307 T308 R310 K311
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 21:01:24 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zu5', asym_id = 'LC0', bs = 'BS01', title = 'Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zu5', asym_id='LC0', bs='BS01', title='Differences in structure and hibernation mechani...t diversification of the microsporidian ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6zu5', asym_id = 'LC0'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6zu5', asym_id='LC0')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>