Structure of PDB 8r6f Chain L Binding Site BS01

Receptor Information
>8r6f Chain L (length=146) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AEQTEKSFLKQPKVFLSTKKADKAKRPGKAGNRFWKSVGLGFKTPREAID
GTYIDKKCPFTGTVAIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRY
EKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVVPAG
Ligand information
>8r6f Chain A (length=1177) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugugcaaguaugaaccaaugaacugugaaacugcgaauggcucau
uaaaucaguuauaguuuguuugaugguauacucggauaaccguaguaauu
cuagagcuaauacgugcaacaaaccccgacuucugggaggggcgcauuua
uuagaugaugauucaugauaacucgacggaucgcacggccgccggcgacg
caucauucaaauuucugcccuaucaacuuucgaugguaggauaggggccu
accaugguggugacgggugacggagaauuaggguucgauuccggagaggg
agccugagaaacggcuaccacauccaaggaaggcagcaggcgcgcaaauu
acccaauccugacacggggagguagugacaauaaauaacaauaccggggu
cugguaauuggaaugaguacaaucuaaaucccuuaacgaggauccauugg
agggcaagucuggugccagcagccgcgguaauuccagcuccaauagcgua
uauuuaaguuguugcaguuaaaaagcucguaguuggaccuugggccgcga
ccccguuacuuugaagaaauuagagugcucaaagcaagccaucgcucugg
auacauuagcaugggauaacaucauaggauuccgguccuagggaucggag
uaaugauuaauagggacagucgggggcauucguauuucauagucagaggu
gaaauucuuggauuuaugaaagacgaacaacugcgaaagcauuugccaag
gauguuuucauuaaucaagaacgaaaguugggggcucgaagacgaucaga
uaccguccuagucucaaccauaaacgaugccgaccagggaucggcggaug
uugcuuaggacuccgccggcaccuuaugagaaaucaaagucuuuggguuc
cggggggaguauggucgcaaggcugaaacuuaaaggaauugacggaagug
guggagcgauuuguccuuuguacacaccgcccgucgcuccuaccgauuga
augguccggugaaguguucggaucgcggcgacggccgacgucgcgagaag
uccauugaaccuuaucauuuagaggaaggagaagucguaacaagguuucc
guaggugaaccugcggaaggaucauug
...<<<<<.[.((((>>>>>.<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<.........>>...>>.>>......<<...
.....<<<..<<..<<....<<<<<.......<<.....<..<<<.....
>>>..>......>>.........<<<<..<<...>>..>>>>.....<<<
<<<............>>>>>>.........<<<<..<<<.>>>.>>>>..
>>>>>...>>>>..>>>.<<<....<<<....<<<<<<<<.......>>>
>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.
<<<..........>>>.>>.<.<<....>>.>...>>>>>>.........
<<<....<<<.....>>>..>>>..>....>.>.....<<<<<<<<.<.>
.>>>>>.>>>......<<..<...........>..>>.........<<<<
<((......<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>
>>>>..........<.<((.....<.<<...<<<.<.....<<<.<..>.
>>>.<<<<<<.<<.......<<...<.......>..<<<....>>>....
.>>......>>.>>..>>>>.........<<<<<<<<<<.>>>>>>>>>>
.......>....<<<<<<.<<...<<<<..<<..<<<<<<<<...<<<..
....>>>......>>>>>>>>..>>.......<<....>>...>>>>...
>>>>>.>>>...>>>...>>.>....<<<<<<<...<...<<<<.<....
.>.>>>>...>>>>>>>>..........<<<.<<.<<<..<<<<<<<<.<
<<.<<.>>>>>>>>>>>>>..>>>...<<..))>>...>>.....>>>.>
.>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<..
..<<<....>>>...>>>>>>.>>....<..<<.<.<<<<<.<<.....<
<<<<<..<<<..<<<<..<...<<<<<<...<<..>>...>>>>>>...>
..>>>>..>>>..>>>>>>....>>.>>>>>..>.>>...>.....<<<<
<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8r6f High-Resolution Structure and Internal Mobility of a Plant 40S Ribosomal Subunit.
Resolution2.34 Å
Binding residue
(original residue number in PDB)
E6 P13 K14 F16 R27 K30 F35 S38 V39 G40 L41 K57 K58 I67 R68 R70 S78 K80 M81 N82 T84 I86 R89 Y91 H93 K97 Y98 Y101 K103 R104 H105 S106 N107 Q128 R130 P131 L132 S133 K134 T135 R137 F138
Binding residue
(residue number reindexed from 1)
E5 P12 K13 F15 R26 K29 F34 S37 V38 G39 L40 K56 K57 I66 R67 R69 S77 K79 M80 N81 T83 I85 R88 Y90 H92 K96 Y97 Y100 K102 R103 H104 S105 N106 Q127 R129 P130 L131 S132 K133 T134 R136 F137
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8r6f, PDBe:8r6f, PDBj:8r6f
PDBsum8r6f
PubMed38139282
UniProtW5BFB7

[Back to BioLiP]