Structure of PDB 8p0t Chain L Binding Site BS01

Receptor Information
>8p0t Chain L (length=202) Species: 412133 (Trichomonas vaginalis G3) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TTLSFIYNGGIVVAVDSRATGGQFIFSQTVMKILPLAPNMIGTMAGGAAD
CQYWLRNLSRLIQLHKFRYQQPLTVAAASKILVNELYRYKGYNLSIGSMI
CGYDNTGPHIFYIDNHGSRIAGKRFSVGSGSTHAYGVLDTCYREDMTKEE
ACELGRRAIYHATYRDSGSGGRVSVVHITQNGVEWIDKTDVFDMHDFSKT
TF
Ligand information
Ligand IDX5C
InChIInChI=1S/C45H56N6O6/c1-5-6-8-21-41(54)48-37(23-31-25-46-35-19-13-11-17-33(31)35)42(55)49-38(24-32-26-47-36-20-14-12-18-34(32)36)43(56)50-40(22-30-15-9-7-10-16-30)45(4)44(3,28-53)51-39(27-52)29(2)57-45/h7,9-20,25-27,29,37-40,46-47,51,53H,5-6,8,21-24,28H2,1-4H3,(H,48,54)(H,49,55)(H,50,56)/t29-,37+,38+,39-,40+,44-,45+/m1/s1
InChIKeyCAPIPKYPZCWPIP-WTXFIQMLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCC(=O)N[C@@H](Cc1c[nH]c2c1cccc2)C(=O)N[C@@H](Cc3c[nH]c4c3cccc4)C(=O)N[C@@H](Cc5ccccc5)[C@]6([C@@](N[C@@H]([C@H](O6)C)C=O)(C)CO)C
CACTVS 3.385CCCCCC(=O)N[CH](Cc1c[nH]c2ccccc12)C(=O)N[CH](Cc3c[nH]c4ccccc34)C(=O)N[CH](Cc5ccccc5)[C]6(C)O[CH](C)[CH](N[C]6(C)CO)C=O
CACTVS 3.385CCCCCC(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](Cc3c[nH]c4ccccc34)C(=O)N[C@@H](Cc5ccccc5)[C@]6(C)O[C@H](C)[C@H](N[C@]6(C)CO)C=O
OpenEye OEToolkits 2.0.7CCCCCC(=O)NC(Cc1c[nH]c2c1cccc2)C(=O)NC(Cc3c[nH]c4c3cccc4)C(=O)NC(Cc5ccccc5)C6(C(NC(C(O6)C)C=O)(C)CO)C
FormulaC45 H56 N6 O6
NameN-[(2S)-1-[[(2S)-1-[[(1S)-1-[(2S,3R,5S,6R)-3-(hydroxymethyl)-5-methanoyl-2,3,6-trimethyl-morpholin-2-yl]-2-phenyl-ethyl]amino]-3-(1H-indol-3-yl)-1-oxidanylidene-propan-2-yl]amino]-3-(1H-indol-3-yl)-1-oxidanylidene-propan-2-yl]hexanamide;
proteasome inhibitor CP-17
ChEMBL
DrugBank
ZINC
PDB chain8p0t Chain L Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8p0t Tv20S proteasome in the complex with marizomib
Resolution2.65 Å
Binding residue
(original residue number in PDB)
T2 T3 D17 R19 A20 T21 F27 V31 K33 M45 A46 G47 G48 A49 S96 G129 S130 G131 G169 S170
Binding residue
(residue number reindexed from 1)
T1 T2 D16 R18 A19 T20 F26 V30 K32 M44 A45 G46 G47 A48 S95 G128 S129 G130 G168 S169
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.25.1: proteasome endopeptidase complex.
External links