Structure of PDB 7xg3 Chain L Binding Site BS01

Receptor Information

>7xg3 Chain L (length=594) Species: 287 (Pseudomonas aeruginosa)

PADALPGEGAVREVLRPLLKQAAEKTAAGKIVFAEAATGTGKGRMIASLA
AAAAIKGDTVVVSAPLAVTWQLVNDMKDIPEVRRVGLTLSLGRPNFISPQ
RTLEWAIDNERADLAAWIEGGGKPLSLRSMETSKVISHELCWLLEDALLL
AEDLPADSLLLTSEDPADCPAQQLYVAMRSNYTEAGIILCSHFMLAAHTR
MMQMRLSLPHFIDTLIVDEAHLLEQAFASVYTHTLRLRPLMRTIEGLDAL
KELFTQMQVATNTSLNVPLSDVPELIPALKDTVKTLGALPTKGMSRDARS
VIRIATRAANDALSGHSRLRIEVTPVHSYPMLLSGRSNLQRALLGLWNAT
GGATLVSATLFTTGDNGSLTRWKLEVPTERAAFLPPVHPAWTTAPVLLHK
EFCAHEPDDSPEWATECAQTIQGVASTAQGGTLVLCTSYQNTELLAGRLG
AALGDRLIVQSKTSSAATCLAQFKAKHKAGIRPVWLGLGAAWTGIDLSDH
SLPDNPELDRLLSDLVITRIPVGQNRSLTHERRTAIGGFRIISQEAAWHF
RQGLGRLVRRPGVTHKNLWVLDARIYGGAAWVAPFRQILDRYKK

Ligand information

>7xg3 Chain J (length=31)

caccctttcattattattatttttttttttt

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7xg3 Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment.
• Resolution: 3.0 Å
• Binding residue (original residue number in PDB): R96 P97 F196 S247 V248 H251 Y470 R557 F570
• Binding residue (residue number reindexed from 1): R93 P94 F193 S229 V230 H233 Y439 R526 F539

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 00:01:25 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7xg3', asym_id = 'L', bs = 'BS01', title = 'Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7xg3', asym_id='L', bs='BS01', title='Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003676,0004386,0005524,0006139,0016818', uniprot = '', pdbid = '7xg3', asym_id = 'L'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0004386,0005524,0006139,0016818', uniprot='', pdbid='7xg3', asym_id='L')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>