Structure of PDB 7pic Chain L Binding Site BS01

Receptor Information
>7pic Chain L (length=118) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LGIDIPNQKRIEIALTYIFGIGLSRSQAILKQANINPDKRVKDLTEEEFV
AIRNVASAYKIEGDLRREIALNIKHLSEIGAWRGLRHRKNLPVRGQRTRT
NARTRKGPRKTVANKKIE
Ligand information
>7pic Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<....(((..>>>>.<<<...<<<<..<<<<<<<<......<
<..<<..<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<.<....<<...<..<<<..<.<<..<..<<<<<<....>>>>>>
.....>>>.>.....<<<<<<<<......>>>>>>>>....<<<<<<...
.>>>>>>.>.>>..>..>>..>.>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.
>>.<<<<<............>>>>>.<<<<....>>>>...>>.>>....
......<<<...<.<<<....>>>..>>>>..>>.>>>>>>..<<<<...
....<<<.....>>>......>>>>...<...<<<.........<<<<<<
<........>>>>>>>..........>>>....>......<<<<(((...
<<<<<......<.)))>........>>>>>>>>>...>>>>..>>>....
......<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<.....
<<<<<<<.....>>>>>>>..>>>>>>>>..>>.>>>>>>...<<<<<<<
<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>
>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>
>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>>>>.
.........<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<<.....<<<<<....>>>>>...>>>..
..)))...<<<<.<<<<<<<.<<..<<<<...<<<<<<<.<<......<<
........>>..........<<<<<<<......<.<<<........<<..
......>>.....>>>.>..<<<.<<<..<<<<<<.......<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<.
........>>>>>>>.....<<<<<....>>>>>........>>>>....
.....>>>...>>>>>>>>>...>>>>>>>...>>..>>>>>>>.....<
<<<<<<.....<<<..<<..<<<<....>>>>..>>....>>>....>>>
>>>>...........<<<<<<<........>>>>>>>...........>>
>>......<<<<<<..........>>>>>>.......>>...>>>>>>>>
>>.>........<<.<.<<<<.<<<..<<<<<...<<<<<....<<<<<<
.<<<..<<....>>.>>>>>>>>>...>>>>>...>>>>>..>>>.>>>>
..>.>>.........<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7pic Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution9.1 Å
Binding residue
(original residue number in PDB)		K13 T20 Y21 I22 F23 G24 I25 G26 L27 S28 R29 K43 R44 N76 L80 W86 R87 R90 H91 R98 G99 Q100 R101 T102 R103 T104 N105 A106 R107 T108 P112 R113 K114 T115 V116 N118 K119 K120
Binding residue
(residue number reindexed from 1)		K9 T16 Y17 I18 F19 G20 I21 G22 L23 S24 R25 K39 R40 N72 L76 W82 R83 R86 H87 R94 G95 Q96 R97 T98 R99 T100 N101 A102 R103 T104 P108 R109 K110 T111 V112 N114 K115 K116
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pic, PDBe:7pic, PDBj:7pic
PDBsum7pic
PubMed36171285
UniProtQ50297|RS13_MYCPN Small ribosomal subunit protein uS13 (Gene Name=rpsM)

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