Structure of PDB 6db9 Chain L Binding Site BS01
Receptor Information
>6db9 Chain L (length=209) Species:
32630
(synthetic construct) [
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DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYS
ASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPSTFGQ
GTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAQWKVDN
ALQGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGSSP
VTKSFNRGE
Ligand information
>6db9 Chain R (length=60) [
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ggaugcgccuugaaaagccugcgaaacacgcagcuggugaaugacagcua
uggcgcaucc
<<<<<<<<<...........<<<.....>>><<<<<........>>>>>.
.>>>>>>>>>
Receptor-Ligand Complex Structure
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PDB
6db9
Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.
Resolution
2.025 Å
Binding residue
(original residue number in PDB)
S92 F95
Binding residue
(residue number reindexed from 1)
S91 F94
Binding affinity
PDBbind-CN
: Kd=708nM
External links
PDB
RCSB:6db9
,
PDBe:6db9
,
PDBj:6db9
PDBsum
6db9
PubMed
30382099
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