Structure of PDB 5zlu Chain L Binding Site BS01

Receptor Information
>5zlu Chain L (length=101) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAY
PIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEPFLAN
A
Ligand information
>5zlu Chain G (length=1514) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac
augcaagucgugcgggccgcgggguuuuacuccguggucagcggcggacg
ggugaguaacgcgugggugaccuacccggaagagggggacaacccgggga
aacucgggcuaaucccccauguggacccgccccuugggguguguccaaag
ggcuuugcccgcuuccggaugggcccgcgucccaucagcuaguugguggg
guaauggcccaccaaggcgacgacggguagccggucugagaggauggccg
gccacaggggcacugagacacgggccccacuccuacgggaggcagcaguu
aggaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggag
gaagaagcccuucgggguguaaacuccugaacccgggacgaaacccccga
cgaggggacugacgguaccgggguaauagcgccggccaacuccgugccag
cagccgcgguaauacggagggcgcgagcguuacccggauucacugggcgu
aaagggcguguaggcggccuggggcgucccaugugaaagaccacggcuca
accgugggggagcgugggauacgcucaggcuagacggugggagagggugg
uggaauucccggaguagcggugaaaugcgcagauaccgggaggaacgccg
auggcgaaggcagccaccugguccacccgugacgcugaggcgcgaaagcg
uggggagcaaaccggauuagauacccggguaguccacgcccuaaacgaug
cgcgcuaggucucugggucuccugggggccgaagcuaacgcguuaagcgc
gccgccuggggaguacggccgcaaggcugaaacucaaaggaauugacggg
ggcccgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaaga
accuuaccaggccuugacaugcuagggaacccgggugaaagccuggggug
cccgcgaggggagcccuagcacaggugcugcauggccgucgucagcucgu
gccgugagguguuggguuaagucccgcaacgagcgcaacccccgccguua
guugccagcgguucggccgggcacucuaacgggacugcccgcgaaagcgg
gaggaaggaggggacgacgucuggucagcauggcccuuacggccugggcg
acacacgugcuacaaugcccacuacaaagcgaugccacccggcaacgggg
agcuaaucgcaaaaaggugggcccaguucggauuggggucugcaacccga
ccccaugaagccggaaucgcuaguaaucgcggaucagccaugccgcggug
aauacguucccgggccuuguacacaccgcccgucacgccaugggagcggg
cucuacccgaagucgccgggagccuacgggcaggcgccgaggguagggcc
cgugacuggggcgaagucguaacaagguagcuguaccggaaggugcggcu
ggaucaccuccuuu
....(((.....<<<<..))).<<<<.<<<<<...<<<<<<.........
.<<<...<<..<<..<<<<<<<<.......>>>>>>>>..>>>>......
.<<.......<<<<<<<...<<...<<<<<<<.<<<<<....<<<<<...
...>>>>>.....>>>>>....<<<<.<<<<<....>>>>>.>>>>...<
<<<...>>>>.>>>>>>>..>>.>>>>>>><<<....<<....<<<<<<<
.......>>>>>>>..>>......>>>..<<<<<<<<....>>>>...>>
>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>...
......<<.<<<....<<<<....>>>>..>>>>>.>.>>>>>...<<<<
......<<<<<..>>>>>.....>>>>....<<<<<........<<<<..
...>>>>..........>>>>>......<<<<<((....<<<<<......
...)).........>>>>>>>>>>..>>>>>>>>>..........<<.(.
.....<<<<...<<<..<<<<<.<<<<<<<<<<<......<<<<<<....
.>>>>>>....>>>>>>>>..>>>>>>>>....<<<<<<.<...<<<<<<
<....<...<<<....<<<......>>>.......>>>....>.......
...<<....>>.>>>>>>>..>.>>>.>>>...>>>...>>>>....<<<
<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<
<<<<<..<<<<<<<<.......>>>>>>>>...<<...)>>.....>>>>
>>..>>..<<......<<<<....>>>>....>>...>>>>...<<<..<
<<<<<<.<<..<<<<<..<<<<<<<<<<......<<........>>....
......<<<<<<<......<.<...<<..<<<<<........>>>>>...
<<......>>...>>...>.>.<<<.<<<..<<<<<<.......<<<<<.
<<<....>>>..<<<<......>>>>...>>>>>.....<<<<.<<<..<
...<<...<<<.....>>>.>>....>..>>>.....<<<<<....>>>>
>........>>>>.........>>>...>>>>>>>>>...>>>>>>>...
>>.>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>.
.>>....>>>.....>>>>>>>.............<<<<<........>>
>>>............>>>>>.....<<<<<<<..........>>>>>>>.
.....>>...>>>>>>>.>>.>.....<..<<.<.<<<..<<<..<<<<<
<<<<<<<<.....<<<<....<<<....>>>.>>>>....>>>>>>>>>>
>>>..>>>..>>>..>.>>...>.....<<<<.<<<<....>>>>.>>>>
..............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5zlu Ribosome protection by antibiotic resistance ATP-binding cassette protein.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		K54 E69 N73 R80 K92
Binding residue
(residue number reindexed from 1)		K54 E69 N73 R80 K92
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070181 small ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5zlu, PDBe:5zlu, PDBj:5zlu
PDBsum5zlu
PubMed29712846
UniProtQ5SLP8|RS6_THET8 Small ribosomal subunit protein bS6 (Gene Name=rpsF)

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