Structure of PDB 5t85 Chain L Binding Site BS01

Receptor Information
>5t85 Chain L (length=212) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SYELTQETGVSVALGRTVTITCRGDSLRSHYASWYQKKPGQAPILLFYGK
NNRPSGVPDRFSGSASGNRASLTISGAQAEDDAEYYCSSRDKSGSRLSVF
GGGTKLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVA
WKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTH
EGSTVEKTVAPT
Ligand information
Ligand ID44G
InChIInChI=1S/C18H35O10P/c1-3-5-7-9-17(21)25-13-16(28-18(22)10-8-6-4-2)14-27-29(23,24)26-12-15(20)11-19/h15-16,19-20H,3-14H2,1-2H3,(H,23,24)/t15-,16+/m1/s1
InChIKeyCNAHGDCINXNHER-CVEARBPZSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCCCC(=O)OC[C@@H](CO[P](O)(=O)OC[C@H](O)CO)OC(=O)CCCCC
OpenEye OEToolkits 1.9.2CCCCCC(=O)OC[C@@H](COP(=O)(O)OC[C@@H](CO)O)OC(=O)CCCCC
OpenEye OEToolkits 1.9.2CCCCCC(=O)OCC(COP(=O)(O)OCC(CO)O)OC(=O)CCCCC
ACDLabs 12.01O=C(OC(COP(=O)(OCC(O)CO)O)COC(=O)CCCCC)CCCCC
CACTVS 3.385CCCCCC(=O)OC[CH](CO[P](O)(=O)OC[CH](O)CO)OC(=O)CCCCC
FormulaC18 H35 O10 P
Name(2S)-3-{[(R)-{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate
ChEMBL
DrugBank
ZINCZINC000033971124
PDB chain5t85 Chain L Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5t85 Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design.
Resolution2.373 Å
Binding residue
(original residue number in PDB)
R29 H31
Binding residue
(residue number reindexed from 1)
R28 H30
Annotation score1
External links