Structure of PDB 4ly6 Chain L Binding Site BS01
Receptor Information
>4ly6 Chain L (length=247) Species:
63363
(Aquifex aeolicus) [
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EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS
KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFL
DEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELV
KEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVE
GFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV
Ligand information
Ligand ID
ADP
InChI
InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
XTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04
O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
Formula
C10 H15 N5 O10 P2
Name
ADENOSINE-5'-DIPHOSPHATE
ChEMBL
CHEMBL14830
DrugBank
DB16833
ZINC
ZINC000012360703
PDB chain
4ly6 Chain L Residue 400 [
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Receptor-Ligand Complex Structure
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PDB
4ly6
Nucleotide-induced asymmetry within ATPase activator ring drives sigma 54-RNAP interaction and ATP hydrolysis.
Resolution
3.6 Å
Binding residue
(original residue number in PDB)
G170 V171 G172 K173 E174 V175 L320 V356 R357
Binding residue
(residue number reindexed from 1)
G33 V34 G35 K36 E37 V38 L183 V219 R220
Annotation score
5
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0005524
ATP binding
GO:0008134
transcription factor binding
GO:0016887
ATP hydrolysis activity
Biological Process
GO:0006355
regulation of DNA-templated transcription
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Molecular Function
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Biological Process
External links
PDB
RCSB:4ly6
,
PDBe:4ly6
,
PDBj:4ly6
PDBsum
4ly6
PubMed
24240239
UniProt
O67198
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