Structure of PDB 1loj Chain L Binding Site BS01
Receptor Information
>1loj Chain L (length=74) Species:
187420
(Methanothermobacter thermautotrophicus str. Delta H) [
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NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELED
GEVTRRLGTVLIRGDNIVYISRGK
Ligand information
Ligand ID
URI
InChI
InChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1
InChIKey
DRTQHJPVMGBUCF-XVFCMESISA-N
SMILES
Software
SMILES
CACTVS 3.341
OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.5.0
C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O
ACDLabs 10.04
O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)CO
OpenEye OEToolkits 1.5.0
C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)O
CACTVS 3.341
OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O
Formula
C9 H12 N2 O6
Name
URIDINE
ChEMBL
CHEMBL100259
DrugBank
DB02745
ZINC
ZINC000002583633
PDB chain
1loj Chain L Residue 9005 [
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Receptor-Ligand Complex Structure
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PDB
1loj
The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs)
Resolution
1.9 Å
Binding residue
(original residue number in PDB)
H46 N48 R72 G73
Binding residue
(residue number reindexed from 1)
H37 N39 R63 G64
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
Biological Process
GO:0000398
mRNA splicing, via spliceosome
Cellular Component
GO:0120114
Sm-like protein family complex
GO:1990904
ribonucleoprotein complex
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1loj
,
PDBe:1loj
,
PDBj:1loj
PDBsum
1loj
PubMed
12649441
UniProt
O26745
|RUXX_METTH Putative snRNP Sm-like protein (Gene Name=MTH_649)
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