Structure of PDB 8rdv Chain Kd Binding Site BS01 |
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| >8rdv Chain Z2 (length=2710)
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gucaaguaaugaagcgcacaugguggaugccuuggcagucagaggcgaug
aaagacgugacagccugcgauaagcuucggggaggcggcaauauccugug
auccggagauuucugaauggggaaacccacuuaccauaagguagguaucu
uguacaagaagcgaacgaggggaagugaaacaucucaguacccuuaggaa
aagacaucaaaugagauuccccaaguagcggcgagcgaacggggagaagc
cgauuaaugcuaauguagaagaacagcgugggaaagcugaccguaguagg
ugauaguccuguauucgaaacauuagcguuaacauauuaaguagggcggg
acacgagaaauccugucugaagauggggggaccauccuccaaggcuaaau
acuccugacugaccgauagugaaccaguaccgugagggaaaggcgaaaag
aaccccugugaggggagugaaauagaaccugaaaccgugugcguacaagc
aguaggagccucaauuuauuggggugacugcguaccuuuuguauaauggg
ucagcgacuuauauucuguagcaagguuaaccguuuaggggagccguagg
gaaaccgagucuuaauagggcgucuaguugcaggguauagacccgaaacc
gagugaucuauccaugagcagguugaaagugccguaacaggcaccggagg
accgaacccacugucguugaaaagccaggggaugacuuguggauaggggu
gaaaggcuaaucaaacucggugacagcugguucuccccgaaagcuauuua
gguagcgccucggacgaauaccauuggggguagagcacuguuucggcacc
gaugcaaacuccgaauaccgaugaguaauauccgggagacacacggcggg
ugcuaacguccgucguggagagggaaacaacccagaccgccagcuaaggc
cccaaauuccuaguuaagugggaaacgaggugggaaggcauagacagcua
ggagguuggcuuagaagcagccauccuuuaaagaaagcguaauagcucac
uagucgagucggccugcgcggaagauguaacggggcucaaacuaggagcc
gaagcugcggauuugaaacuuguuuucaagugguaggggagcguugugua
agccugugaaggugugucguaaggcaugcuggagguaucacaagagcgaa
ugcugacgugaguaacgauaaugcgagugaaaagcucgcacgccggaaga
ucaaggguuccaguccaacguuaaucggggcugggugagucgaccccuaa
ggcgaggccgaaaggcguagucgaugggaaauugguuaauauuccaauac
uuguuuauagugcgauggagggacggagaagguuaugucagccuggcguu
gguuguccaggugaaaggauguaggcuuacaguuuaggcaaauccggacu
guaggcugagaucugauagcaaggaaguggcaaauaccaugcuuccagga
aaagcuucuaaggcuauaaacgaaucguacccuaaaccgacacaggugau
cagguagagaauaccaaggcgcuugagagaacucugcugaaggaacuagg
caaaaugguaccguaacuucgggagaagguacgcuguugauggugauagg
ucuccuugagcuuucgacagucgcagauaccaggcugcugcaacuguuua
uuaaaaacacagcacucugcaaacacgaaaguggacguauagggugugau
gccugcccggugcuggaagguuaauugaugggguuagcguaagcgaagcu
cuugaucgaagccccaguaaacggcggccguaacuauaacgguccuaagg
uagcgaaauuccuugucagguaaguucugaccugcacgaauggcauaaug
auggcagcgcugucuccagcagagacucagugaaaucgaaaucgcaguga
agaugcuguguacccgcggcuagacggaaagaccccgugaaccuuuacua
cagcuuuacauugaacuuggguucuaacucagguauaacaauaccgagga
caauguaugguggguaguuugacuggggcggucuccuccuaaagaguaac
ggaggaguacgaaggugcgcucagaacggucggaaaucguucauagagua
uaaaggcaaaagcgcgcuuaacugcgagacccacaagucgagcagguacg
aaaguaggucuuagugauccggugguucuguauggaagggccaucgcuca
acggauaaaagguacucuggggauaacaggcugauaccgcccaagaguuc
auaucgacggcgguguuuggcaccucgaugucggcucaucucauccuagg
gcugaagcagguccuaaggguauggcuguucgccauuuaaagagguacgc
gagcuggguuuagaacgucgugagacaguucggucccuaucuaccguggg
cguuggaaauuugagaggaucugcuccuaguacgagaggaccagagugga
cgaaccucugguguucggguugucacgccaguggcauugcccgguagcua
cguucggaugggauaaccgcugaaagcaucuaagcgggaagcccaccuca
agauuagauuucccuaaagagccguugaagacuacgacguugauaggcag
gguguggaagugcagcgaugcauguagcuaaccuguacuaauugcucguu
uggcuugacc |
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......<<....>>..<<<<<<.....<<.....>>....>>>>>>..<<
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<<<<<....<<<<<<<<<<<<<..<<<...<<.....>>...>>>...<<
....>>..<<<<.....>>>>.....>>>>>>>>>>>>>..<<.<...<<
<<<<.....<<<<<<<<<..<<<<....<<<<<......>>>>>..>...
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.>>>>>.<<<<<<<....<<<<<<<<<.....<<<...<<<.<<<<..>>
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<......>>>>>>>>>>....<<<......>>>...<<<<.<<<...<<<
(((.....<<<<<<...........<<..<<<<<..<<........<<<<
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<<<.<<...<<<<<<...<<.....>>.>>>>>>....((<<<.<<<...
<<<...<<<....>>>...>>>...>>>..<<<<<........>>>>>))
<<<<<<<<<<<.<...<<<<....<<<<..<<<..<<<<<<<<<<<...[
[[[...>>>>>>....<<<<...<<<<<<<<<<<..<<.....>>.>>>>
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....>>>>...>>>>>>>>>>>>.>>>..>>.....<<......>>>>>>
>.<<<<.....>>>>..>>>>..<<<<....<<<<<<<<.<<........
.......<<<<<...............>>>>><<<<<<<<.<<<...<<<
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..<...........<<<<<<.....>>>>>>.....>....>>>>>..>>
.>>>>>>>.....>>.>>>>>>>>.>>>>>>.....>.....<<<<<...
.....>>>>>..<<<<<<<.<<<<.<<......<<<<.<<<<<<..<<<<
<.<<<.<<<<<.<<<<<..>>>>>...<<<.<<<<<....>>>>>>>>..
..>>>>>.>>>..>>>>>..<<<<.....>>>><<<<<<...........
>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....<<.
[.(((>>....>>>>>>>...<<<<..<<<......>>>..>>>>.<<<.
...>>>.>>)))]......<<<<<<<.<<..))))..>>>>>>>>>....
.........>>>>..>>>>>>.......<<<<...<<<<<<...<<....
...>>...>>>>>>....>>>.>.......<<<<<.<<<<<<..<<<<<<
<<<......>>>>>>..>>>.<<<<<.....>>>>>.....>>>>>..>.
..>>>.>>....<<<<<<<....>>>.>>>>....>>..>>>>>>>>>>>
....<<<<<<<...<<<<..<<<<<<.................>>>>>>.
<<<<<...<<<<...<<<<<<<<<<<]]]]>>>>>>..>>>>>...>>>>
.>>>>>...<<<....<<<<<...........>>>>>....>>>.>>>>.
......>>>>>>>.....<<<<<<<<<.......>>>>>....<<<<<<<
<..<<....<<<<<....>>>>>...>>...>>>>>.>>>...>>>>...
..>>>>>>>. |
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| PDB | 8rdv A bacterial ribosome hibernation factor with evolutionary connections to eukaryotic protein synthesis |
| Resolution | 2.6 Å |
Binding residue
(original residue number in PDB) | L5 N6 P10 G13 A14 K15 K16 A18 Q19 R20 R21 G22 R23 G24 G26 S27 G30 K31 T32 G34 R35 G36 V37 K38 G39 Q40 K41 S42 R43 S44 S47 R49 F52 G54 G55 Q56 T57 Y60 R61 R62 L63 P64 K65 F66 G67 F68 S70 K71 M72 A73 E78 R80 E83 N85 K86 N101 R104 H105 R109 R111 I113 L114 S115 T130 K131 G132 |
Binding residue
(residue number reindexed from 1) | L4 N5 P9 G12 A13 K14 K15 A17 Q18 R19 R20 G21 R22 G23 G25 S26 G29 K30 T31 G33 R34 G35 V36 K37 G38 Q39 K40 S41 R42 S43 S46 R48 F51 G53 G54 Q55 T56 Y59 R60 R61 L62 P63 K64 F65 G66 F67 S69 K70 M71 A72 E77 R79 E82 N84 K85 N100 R103 H104 R108 R110 I112 L113 S114 T129 K130 G131 |
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| Enzyme Commision number |
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