Structure of PDB 8r05 Chain K Binding Site BS01

Receptor Information
>8r05 Chain K (length=183) Species: 2218628 (Photorhabdus laumondii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LVPMVVSYDIYSRLLKERIIFLTGQVEDHMANLVAAQMLFLEAENPEKDI
FLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKG
KRICLPNSRVMIHQPLGGFQGQATDIEIHAQEILKVKSRMNELMAKHTGR
PIEEIAKDTERDRFLSADEAVEYGLVDKIFTHR
Ligand information
Ligand IDVSZ
InChIInChI=1S/C18H32N2O6/c1-7-11(6)14(18(25)26)20-16(23)13(10(4)5)19-17(24)15(22)12(8-21)9(2)3/h8-15,22H,7H2,1-6H3,(H,19,24)(H,20,23)(H,25,26)/t11-,12-,13-,14-,15+/m0/s1
InChIKeyNPCIMWWVLQVJPA-YYFQZIEXSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCC(C)C(C(=O)O)NC(=O)C(C(C)C)NC(=O)C(C(C=O)C(C)C)O
CACTVS 3.385CC[CH](C)[CH](NC(=O)[CH](NC(=O)[CH](O)[CH](C=O)C(C)C)C(C)C)C(O)=O
OpenEye OEToolkits 2.0.7CC[C@H](C)[C@@H](C(=O)O)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]([C@@H](C=O)C(C)C)O
CACTVS 3.385CC[C@H](C)[C@H](NC(=O)[C@@H](NC(=O)[C@H](O)[C@@H](C=O)C(C)C)C(C)C)C(O)=O
FormulaC18 H32 N2 O6
NameCystargolide A (bound);
(2S,3S)-2-[[(2S)-2-[[(2R,3S)-3-methanoyl-4-methyl-2-oxidanyl-pentanoyl]amino]-3-methyl-butanoyl]amino]-3-methyl-pentanoic acid
ChEMBL
DrugBank
ZINC
PDB chain8r05 Chain K Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8r05 Structure of Staphylococcus aureus ClpP Bound to the Covalent Active Site Inhibitor Cystargolide A.
Resolution2.5 Å
Binding residue
(original residue number in PDB)
G81 G82 I84 S111 M112 H136 P138 L139 I156
Binding residue
(residue number reindexed from 1)
G58 G59 I61 S88 M89 H113 P115 L116 I133
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.21.92: endopeptidase Clp.
Gene Ontology
Molecular Function
GO:0004176 ATP-dependent peptidase activity
GO:0004252 serine-type endopeptidase activity
GO:0008236 serine-type peptidase activity
GO:0051117 ATPase binding
Biological Process
GO:0006508 proteolysis
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins
Cellular Component
GO:0005737 cytoplasm
GO:0009368 endopeptidase Clp complex

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Cellular Component
External links
PDB RCSB:8r05, PDBe:8r05, PDBj:8r05
PDBsum8r05
PubMed38029352
UniProtQ7N0L3|CLPP_PHOLL ATP-dependent Clp protease proteolytic subunit (Gene Name=clpP)

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