Structure of PDB 8j90 Chain K Binding Site BS01

Receptor Information
>8j90 Chain K (length=504) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ETVIKLQNELCPLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGK
TIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAIIYHG
DKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVID
EGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDI
FTSHDEFESWFDEEEEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKK
EIIMYATMTDHQKKFQEHLVNNTLEAHLGENAKLNNLVIQLRKNCNHPDL
LQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKL
LDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRA
GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQ
SIETRVLKRAYSKLKLEHVVIGQQTDISDADLDRLLDRVKGPGWEVVLPS
SGGM
Ligand information
>8j90 Chain I (length=111) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gtgccgaggccgctcaattggtcgtagacagctctagcaccgcttaaacg
cacgtacgcgctgtcccccgcgttttaaccgccaaggggattactcccta
gtctccaggca
Receptor-Ligand Complex Structure
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PDB8j90 Molecular and structural basis of the chromatin remodeling activity by Arabidopsis DDM1.
Resolution4.71 Å
Binding residue
(original residue number in PDB)		R337 K339 C343 K344 W622 N623
Binding residue
(residue number reindexed from 1)		R154 K156 C160 K161 W420 N421
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003678 DNA helicase activity
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006338 chromatin remodeling
GO:0006346 DNA methylation-dependent heterochromatin formation
GO:0009294 DNA-mediated transformation
GO:0031507 heterochromatin formation
GO:0032197 retrotransposition
GO:0032508 DNA duplex unwinding
GO:0040029 epigenetic regulation of gene expression
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8j90, PDBe:8j90, PDBj:8j90
PDBsum8j90
PubMed38992002
UniProtQ9XFH4|DDM1_ARATH ATP-dependent DNA helicase DDM1 (Gene Name=DDM1)

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