Structure of PDB 8fai Chain K Binding Site BS01

Receptor Information
>8fai Chain K (length=68) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GGGTDPATMVNNICTFILGPFGQSLAVLGIVAIGISWMFGRASLGLVAGV
VGGIVIMFGASFLGKTLT
Ligand information
Ligand IDXL0
InChIInChI=1S/C40H75O10P/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-40(44)50-38(36-49-51(45,46)48-34-37(42)33-41)35-47-39(43)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h14,16-18,37-38,41-42H,3-13,15,19-36H2,1-2H3,(H,45,46)/b16-14-,18-17-/t37-,38-/m1/s1
InChIKeyVCYYBLIRAQBPTM-CTDKCSBDSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(OC(COP(O)(=O)OCC(O)CO)COC(=O)CCCCCCC/C=C\CCCCCC)CCCCCCC/C=C\CCCCCCCC
CACTVS 3.385CCCCCCCCC=CCCCCCCCC(=O)O[CH](COC(=O)CCCCCCCC=CCCCCCC)CO[P](O)(=O)OC[CH](O)CO
CACTVS 3.385CCCCCCCC\C=C/CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCC\C=C/CCCCCC)CO[P](O)(=O)OC[C@H](O)CO
OpenEye OEToolkits 2.0.7CCCCCCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCC/C=C\CCCCCC)COP(=O)(O)OC[C@@H](CO)O
OpenEye OEToolkits 2.0.7CCCCCCCCC=CCCCCCCCC(=O)OC(COC(=O)CCCCCCCC=CCCCCCC)COP(=O)(O)OCC(CO)O
FormulaC40 H75 O10 P
Name(7Z,19R,22S,25R)-22,25,26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacos-7-en-19-yl (9Z)-octadec-9-enoate
ChEMBL
DrugBank
ZINC
PDB chain8fai Chain K Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8fai Cryo-EM structure of the Agrobacterium tumefaciens T4SS-associated T-pilus reveals stoichiometric protein-phospholipid assembly.
Resolution3.0 Å
Binding residue
(original residue number in PDB)
W87 R91 A92 S93 V101
Binding residue
(residue number reindexed from 1)
W37 R41 A42 S43 V51
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8fai, PDBe:8fai, PDBj:8fai
PDBsum8fai
PubMed36870333
UniProtP17792|VIRB2_AGRFC Protein virB2 (Gene Name=virB2)

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